Hb_000254_010

Information

Type -
Description -
Location Contig254: 7793-12764
Sequence    

Annotation

kegg
ID tcc:TCM_028747
description Proline extensin-like receptor kinase 1
nr
ID XP_012073359.1
description PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID A0A067KMC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06288 PE=3 SV=1
Gene Ontology
ID GO:0005622
description proline-rich receptor-like protein kinase perk15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26517: 7824-8311 , PASA_asmbl_26518: 7922-12257 , PASA_asmbl_26519: 7922-48247 , PASA_asmbl_26520: 7922-8761 , PASA_asmbl_26522: 7922-46995
cDNA
(Sanger)
(ID:Location)		 021_D09.ab1: 7824-8311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_010 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
2 Hb_001048_100 0.1299987096 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
3 Hb_001189_100 0.130111422 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
4 Hb_042202_020 0.1391601992 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
5 Hb_033234_010 0.1403921304 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
6 Hb_000847_020 0.143688323 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
7 Hb_000024_130 0.1445402755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000085_380 0.1458892778 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004920_110 0.1489384047 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002603_010 0.1509545146 - - unnamed protein product [Vitis vinifera]
11 Hb_003106_110 0.1513192163 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
12 Hb_064985_010 0.1554144495 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
13 Hb_073808_010 0.1560636824 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
14 Hb_000574_370 0.1561415725 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
15 Hb_001353_020 0.1573758828 - - conserved hypothetical protein [Ricinus communis]
16 Hb_026698_020 0.1578190151 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_008066_080 0.1591516396 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
18 Hb_000731_210 0.1592917012 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000094_250 0.1613378909 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
20 Hb_003142_060 0.1615320078 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000254_010 Hb_000254_010 Hb_001048_100 Hb_001048_100 Hb_000254_010--Hb_001048_100 Hb_001189_100 Hb_001189_100 Hb_000254_010--Hb_001189_100 Hb_042202_020 Hb_042202_020 Hb_000254_010--Hb_042202_020 Hb_033234_010 Hb_033234_010 Hb_000254_010--Hb_033234_010 Hb_000847_020 Hb_000847_020 Hb_000254_010--Hb_000847_020 Hb_000024_130 Hb_000024_130 Hb_000254_010--Hb_000024_130 Hb_031385_010 Hb_031385_010 Hb_001048_100--Hb_031385_010 Hb_000760_080 Hb_000760_080 Hb_001048_100--Hb_000760_080 Hb_000731_210 Hb_000731_210 Hb_001048_100--Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_001048_100--Hb_002301_370 Hb_000230_360 Hb_000230_360 Hb_001048_100--Hb_000230_360 Hb_000061_310 Hb_000061_310 Hb_001048_100--Hb_000061_310 Hb_000398_140 Hb_000398_140 Hb_001189_100--Hb_000398_140 Hb_004079_100 Hb_004079_100 Hb_001189_100--Hb_004079_100 Hb_073808_010 Hb_073808_010 Hb_001189_100--Hb_073808_010 Hb_019026_050 Hb_019026_050 Hb_001189_100--Hb_019026_050 Hb_008066_080 Hb_008066_080 Hb_001189_100--Hb_008066_080 Hb_000594_160 Hb_000594_160 Hb_001189_100--Hb_000594_160 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_001008_110 Hb_001008_110 Hb_042202_020--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060 Hb_033234_010--Hb_002833_020 Hb_000085_380 Hb_000085_380 Hb_033234_010--Hb_000085_380 Hb_000072_020 Hb_000072_020 Hb_033234_010--Hb_000072_020 Hb_132840_030 Hb_132840_030 Hb_033234_010--Hb_132840_030 Hb_000120_310 Hb_000120_310 Hb_033234_010--Hb_000120_310 Hb_000847_020--Hb_000527_140 Hb_000847_020--Hb_000024_130 Hb_064985_010 Hb_064985_010 Hb_000847_020--Hb_064985_010 Hb_000847_020--Hb_003142_060 Hb_000527_070 Hb_000527_070 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010 Hb_000024_130--Hb_000731_210 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_003106_230 Hb_003106_230 Hb_000024_130--Hb_003106_230 Hb_000024_130--Hb_042202_020 Hb_000024_130--Hb_003142_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.429845 7.83864 8.41261 8.67222 0.28643 0.829892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.121619 0.0410147 2.32036 9.66802 6.62811

CAGE analysis