Hb_011909_010

Information

Type -
Description -
Location Contig11909: 11599-25730
Sequence    

Annotation

kegg
ID vvi:100246941
description uncharacterized LOC100246941
nr
ID XP_010644281.1
description PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID B9SSB2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1228290 PE=4 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase sd1-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05624: 12466-12817 , PASA_asmbl_05633: 24986-25539 , PASA_asmbl_05637: 21864-22085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011909_010 0.0 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
2 Hb_000345_320 0.1221109599 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
3 Hb_000317_350 0.1361112343 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
4 Hb_000209_100 0.1391171911 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
5 Hb_082741_010 0.1445549242 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
6 Hb_000205_250 0.1448110557 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
7 Hb_028811_010 0.1461879075 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
8 Hb_000808_170 0.1469706376 - - protein disulfide isomerase, putative [Ricinus communis]
9 Hb_011925_020 0.153138999 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_149515_010 0.1551341327 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
11 Hb_001080_140 0.1554733301 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
12 Hb_000227_330 0.1576453952 - - Acyl-CoA synthetase [Ricinus communis]
13 Hb_002276_040 0.158692216 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
14 Hb_000049_250 0.1604323912 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
15 Hb_010872_050 0.161300709 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
16 Hb_001691_200 0.1624476088 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
17 Hb_000009_120 0.164689859 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
18 Hb_000271_120 0.1649310544 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
19 Hb_006916_110 0.1657360536 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_000661_260 0.1662329849 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]

Gene co-expression network

sample Hb_011909_010 Hb_011909_010 Hb_000345_320 Hb_000345_320 Hb_011909_010--Hb_000345_320 Hb_000317_350 Hb_000317_350 Hb_011909_010--Hb_000317_350 Hb_000209_100 Hb_000209_100 Hb_011909_010--Hb_000209_100 Hb_082741_010 Hb_082741_010 Hb_011909_010--Hb_082741_010 Hb_000205_250 Hb_000205_250 Hb_011909_010--Hb_000205_250 Hb_028811_010 Hb_028811_010 Hb_011909_010--Hb_028811_010 Hb_002276_040 Hb_002276_040 Hb_000345_320--Hb_002276_040 Hb_000345_320--Hb_082741_010 Hb_000345_320--Hb_000209_100 Hb_006916_110 Hb_006916_110 Hb_000345_320--Hb_006916_110 Hb_010872_050 Hb_010872_050 Hb_000345_320--Hb_010872_050 Hb_000144_120 Hb_000144_120 Hb_000345_320--Hb_000144_120 Hb_028960_030 Hb_028960_030 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_005333_050 Hb_005333_050 Hb_000317_350--Hb_005333_050 Hb_000321_090 Hb_000321_090 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_020805_180 Hb_020805_180 Hb_000317_350--Hb_020805_180 Hb_001642_070 Hb_001642_070 Hb_000209_100--Hb_001642_070 Hb_000209_100--Hb_006916_110 Hb_000535_050 Hb_000535_050 Hb_000209_100--Hb_000535_050 Hb_011925_020 Hb_011925_020 Hb_000209_100--Hb_011925_020 Hb_005074_020 Hb_005074_020 Hb_000209_100--Hb_005074_020 Hb_016347_010 Hb_016347_010 Hb_000209_100--Hb_016347_010 Hb_082741_010--Hb_006916_110 Hb_012760_040 Hb_012760_040 Hb_082741_010--Hb_012760_040 Hb_042474_010 Hb_042474_010 Hb_082741_010--Hb_042474_010 Hb_000347_450 Hb_000347_450 Hb_082741_010--Hb_000347_450 Hb_082741_010--Hb_000209_100 Hb_002235_310 Hb_002235_310 Hb_000205_250--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000205_250--Hb_000866_110 Hb_000271_120 Hb_000271_120 Hb_000205_250--Hb_000271_120 Hb_000205_250--Hb_011925_020 Hb_000125_180 Hb_000125_180 Hb_000205_250--Hb_000125_180 Hb_001956_060 Hb_001956_060 Hb_000205_250--Hb_001956_060 Hb_001486_030 Hb_001486_030 Hb_028811_010--Hb_001486_030 Hb_001623_160 Hb_001623_160 Hb_028811_010--Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_028811_010--Hb_001214_090 Hb_000414_110 Hb_000414_110 Hb_028811_010--Hb_000414_110 Hb_004064_010 Hb_004064_010 Hb_028811_010--Hb_004064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.948922 2.61857 2.1317 1.13341 0.333425 0.528914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01521 0.683919 1.96998 4.80512 2.10248

CAGE analysis