Hb_001369_140

Information

Type -
Description -
Location Contig1369: 121852-122490
Sequence    

Annotation

kegg
ID rcu:RCOM_1500900
description hypothetical protein
nr
ID XP_002510981.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID C8YR32
description Lipoxygenase homology domain-containing protein 1 OS=Mus musculus GN=Loxhd1 PE=2 SV=1
trembl
ID B9R9V6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10143: 121900-122489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_064122_010 0.151709016 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
3 Hb_000380_210 0.1717199084 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
4 Hb_000080_080 0.1722710823 - - -
5 Hb_032225_030 0.1725698785 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
6 Hb_009780_110 0.1755664116 - - PREDICTED: protein RSI-1 [Cicer arietinum]
7 Hb_002597_010 0.1756955485 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
8 Hb_007545_140 0.1813692304 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
9 Hb_003090_230 0.181967256 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009711_040 0.1846819155 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_000041_290 0.1917407226 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_000749_160 0.1972340545 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_000589_210 0.1986500254 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
14 Hb_002016_020 0.1990877612 - - RALFL33, putative [Ricinus communis]
15 Hb_142382_010 0.1994499944 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
16 Hb_129637_010 0.201835146 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
17 Hb_000417_350 0.2040669194 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000186_290 0.2042656301 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
19 Hb_032208_050 0.2056963466 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
20 Hb_025254_020 0.2060414221 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_001369_140 Hb_001369_140 Hb_064122_010 Hb_064122_010 Hb_001369_140--Hb_064122_010 Hb_000380_210 Hb_000380_210 Hb_001369_140--Hb_000380_210 Hb_000080_080 Hb_000080_080 Hb_001369_140--Hb_000080_080 Hb_032225_030 Hb_032225_030 Hb_001369_140--Hb_032225_030 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_002597_010 Hb_002597_010 Hb_001369_140--Hb_002597_010 Hb_009711_040 Hb_009711_040 Hb_064122_010--Hb_009711_040 Hb_000676_380 Hb_000676_380 Hb_064122_010--Hb_000676_380 Hb_003090_230 Hb_003090_230 Hb_064122_010--Hb_003090_230 Hb_009732_040 Hb_009732_040 Hb_064122_010--Hb_009732_040 Hb_142382_010 Hb_142382_010 Hb_064122_010--Hb_142382_010 Hb_118707_020 Hb_118707_020 Hb_000380_210--Hb_118707_020 Hb_000967_010 Hb_000967_010 Hb_000380_210--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_000380_210--Hb_021418_010 Hb_008727_030 Hb_008727_030 Hb_000380_210--Hb_008727_030 Hb_018133_110 Hb_018133_110 Hb_000380_210--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_000380_210--Hb_000032_560 Hb_002217_490 Hb_002217_490 Hb_000080_080--Hb_002217_490 Hb_005672_030 Hb_005672_030 Hb_000080_080--Hb_005672_030 Hb_000676_130 Hb_000676_130 Hb_000080_080--Hb_000676_130 Hb_000041_290 Hb_000041_290 Hb_000080_080--Hb_000041_290 Hb_007403_040 Hb_007403_040 Hb_000080_080--Hb_007403_040 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_007545_140 Hb_007545_140 Hb_032225_030--Hb_007545_140 Hb_001170_010 Hb_001170_010 Hb_032225_030--Hb_001170_010 Hb_000110_380 Hb_000110_380 Hb_032225_030--Hb_000110_380 Hb_030982_060 Hb_030982_060 Hb_032225_030--Hb_030982_060 Hb_014865_010 Hb_014865_010 Hb_009780_110--Hb_014865_010 Hb_001242_020 Hb_001242_020 Hb_009780_110--Hb_001242_020 Hb_009780_110--Hb_000676_130 Hb_161346_010 Hb_161346_010 Hb_009780_110--Hb_161346_010 Hb_009780_110--Hb_003090_230 Hb_002437_010 Hb_002437_010 Hb_009780_110--Hb_002437_010 Hb_002597_010--Hb_000032_560 Hb_000005_230 Hb_000005_230 Hb_002597_010--Hb_000005_230 Hb_002016_020 Hb_002016_020 Hb_002597_010--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_000347_230 Hb_000347_230 Hb_002597_010--Hb_000347_230 Hb_002597_010--Hb_018133_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293702 0.999856 1.32712 8.14996 0.392822 0.167485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.352758 0.64675 0 9.72678 0.351394

CAGE analysis