Hb_142382_010

Information

Type rubber biosynthesis
Description Gene Name: Hydroxymethylglutaryl coenzyme A reductase
Location Contig142382: 13121-15323
Sequence    

Annotation

kegg
ID rcu:RCOM_1565000
description hmg-CoA reductase, putative (EC:1.1.1.34)
nr
ID BAF98281.1
description hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
swissprot
ID O64966
description 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1
trembl
ID A9ZMZ9
description 3-hydroxy-3-methylglutaryl coenzyme A reductase OS=Hevea brasiliensis GN=HbHMGR PE=2 SV=1
Gene Ontology
ID GO:0005789
description 3-hydroxy-3-methylglutaryl-coenzyme a reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11273: 13531-14965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142382_010 0.0 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
2 Hb_003090_230 0.1660723352 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000676_380 0.175476801 - - cytochrome P450 family protein [Populus trichocarpa]
4 Hb_004875_040 0.1774703185 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
5 Hb_001856_150 0.1873032385 - - -
6 Hb_001775_130 0.1909409167 - - Prephenate dehydratase [Hevea brasiliensis]
7 Hb_020805_110 0.1910420683 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
8 Hb_064122_010 0.1919448245 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
9 Hb_003171_070 0.1929640629 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
10 Hb_009711_040 0.1935103809 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_006314_020 0.1939826981 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
12 Hb_128582_010 0.1962618199 - - -
13 Hb_001369_140 0.1994499944 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000380_210 0.1996318927 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
15 Hb_000081_030 0.2004433308 - - BnaC09g05810D [Brassica napus]
16 Hb_002876_190 0.2014900207 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
17 Hb_003435_070 0.2037811321 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
18 Hb_003967_010 0.2062964785 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003371_040 0.2063030761 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
20 Hb_000230_160 0.2067324699 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_142382_010 Hb_142382_010 Hb_003090_230 Hb_003090_230 Hb_142382_010--Hb_003090_230 Hb_000676_380 Hb_000676_380 Hb_142382_010--Hb_000676_380 Hb_004875_040 Hb_004875_040 Hb_142382_010--Hb_004875_040 Hb_001856_150 Hb_001856_150 Hb_142382_010--Hb_001856_150 Hb_001775_130 Hb_001775_130 Hb_142382_010--Hb_001775_130 Hb_020805_110 Hb_020805_110 Hb_142382_010--Hb_020805_110 Hb_003090_230--Hb_000676_380 Hb_003090_230--Hb_020805_110 Hb_009711_040 Hb_009711_040 Hb_003090_230--Hb_009711_040 Hb_021418_010 Hb_021418_010 Hb_003090_230--Hb_021418_010 Hb_003090_230--Hb_004875_040 Hb_001596_030 Hb_001596_030 Hb_003090_230--Hb_001596_030 Hb_000676_380--Hb_020805_110 Hb_003171_070 Hb_003171_070 Hb_000676_380--Hb_003171_070 Hb_000676_380--Hb_001856_150 Hb_000676_380--Hb_004875_040 Hb_000676_380--Hb_009711_040 Hb_004875_040--Hb_020805_110 Hb_148817_010 Hb_148817_010 Hb_004875_040--Hb_148817_010 Hb_004875_040--Hb_001856_150 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_006314_020 Hb_006314_020 Hb_004875_040--Hb_006314_020 Hb_001856_150--Hb_006314_020 Hb_000230_160 Hb_000230_160 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_000081_030 Hb_000081_030 Hb_001856_150--Hb_000081_030 Hb_001856_150--Hb_003171_070 Hb_002876_190 Hb_002876_190 Hb_001775_130--Hb_002876_190 Hb_039096_010 Hb_039096_010 Hb_001775_130--Hb_039096_010 Hb_003371_040 Hb_003371_040 Hb_001775_130--Hb_003371_040 Hb_001775_130--Hb_003171_070 Hb_001775_130--Hb_006314_020 Hb_001775_130--Hb_001856_150 Hb_020805_110--Hb_009711_040 Hb_000306_050 Hb_000306_050 Hb_020805_110--Hb_000306_050 Hb_020805_110--Hb_001856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0944207 8.03956 1.5916 49.0915 0.009822 1.69372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29329 0.844505 0.568618 47.8074 2.69288

CAGE analysis