Hb_000005_230

Information

Type -
Description -
Location Contig5: 244313-245246
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01160g
description POPTRDRAFT_558314; hypothetical protein
nr
ID XP_002313539.2
description hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HQN8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s01160g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45699: 244444-245291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_230 0.0 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
2 Hb_006788_010 0.1151180223 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
3 Hb_002597_010 0.1157336775 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
4 Hb_006618_080 0.1169551954 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
5 Hb_000032_560 0.12814678 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
6 Hb_007313_010 0.1405001498 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
7 Hb_000347_230 0.1449995017 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
8 Hb_000580_070 0.1456961778 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
9 Hb_002025_350 0.1476275809 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
10 Hb_000834_210 0.1508426684 - - unnamed protein product [Vitis vinifera]
11 Hb_008066_060 0.15206678 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
12 Hb_018133_110 0.1535989033 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_001470_040 0.1551904659 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
14 Hb_000834_040 0.1559818088 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
15 Hb_000589_100 0.156317681 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_000723_240 0.1574584046 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
17 Hb_003734_120 0.1588738678 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
18 Hb_000276_030 0.1588911265 - - dimethylaniline monooxygenase, putative [Ricinus communis]
19 Hb_000393_030 0.1591742269 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_000653_010 0.1621850368 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]

Gene co-expression network

sample Hb_000005_230 Hb_000005_230 Hb_006788_010 Hb_006788_010 Hb_000005_230--Hb_006788_010 Hb_002597_010 Hb_002597_010 Hb_000005_230--Hb_002597_010 Hb_006618_080 Hb_006618_080 Hb_000005_230--Hb_006618_080 Hb_000032_560 Hb_000032_560 Hb_000005_230--Hb_000032_560 Hb_007313_010 Hb_007313_010 Hb_000005_230--Hb_007313_010 Hb_000347_230 Hb_000347_230 Hb_000005_230--Hb_000347_230 Hb_006788_010--Hb_006618_080 Hb_002025_350 Hb_002025_350 Hb_006788_010--Hb_002025_350 Hb_006788_010--Hb_002597_010 Hb_006788_010--Hb_000347_230 Hb_000815_280 Hb_000815_280 Hb_006788_010--Hb_000815_280 Hb_002597_010--Hb_000032_560 Hb_002016_020 Hb_002016_020 Hb_002597_010--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_002597_010--Hb_000347_230 Hb_018133_110 Hb_018133_110 Hb_002597_010--Hb_018133_110 Hb_006618_080--Hb_000347_230 Hb_006618_080--Hb_007313_010 Hb_000723_240 Hb_000723_240 Hb_006618_080--Hb_000723_240 Hb_000589_100 Hb_000589_100 Hb_006618_080--Hb_000589_100 Hb_003734_120 Hb_003734_120 Hb_006618_080--Hb_003734_120 Hb_000032_560--Hb_018133_110 Hb_000580_070 Hb_000580_070 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_000834_210 Hb_000834_210 Hb_007313_010--Hb_000834_210 Hb_007313_010--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_007313_010--Hb_003160_050 Hb_003768_100 Hb_003768_100 Hb_007313_010--Hb_003768_100 Hb_001514_070 Hb_001514_070 Hb_007313_010--Hb_001514_070 Hb_007313_010--Hb_003734_120 Hb_000347_230--Hb_018133_110 Hb_001623_400 Hb_001623_400 Hb_000347_230--Hb_001623_400 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_000347_230--Hb_003734_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131751 4.93098 5.5119 10.737 0 0.131379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.64142 0.560354 0.706793 27.5751 2.9123

CAGE analysis