Hb_006788_010

Information

Type -
Description -
Location Contig6788: 6135-9308
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04840g
description POPTRDRAFT_412082; hypothetical protein
nr
ID XP_012092155.1
description PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
swissprot
ID Q9LY77
description Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1
trembl
ID A0A067JPC8
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_21865 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53643: 6561-8909 , PASA_asmbl_53644: 9002-9336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_010 0.0 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
2 Hb_000005_230 0.1151180223 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
3 Hb_006618_080 0.1315331757 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
4 Hb_002025_350 0.1484235958 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
5 Hb_002597_010 0.152653001 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
6 Hb_000347_230 0.1555143513 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
7 Hb_000815_280 0.1637430257 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
8 Hb_000556_180 0.1657695593 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
9 Hb_000589_100 0.1705745324 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_001268_330 0.1730161923 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_111985_160 0.1731809944 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
12 Hb_000194_080 0.177533105 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
13 Hb_000723_240 0.1801978359 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
14 Hb_007313_010 0.1831614561 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
15 Hb_000057_180 0.1847137827 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
16 Hb_000029_420 0.1874701833 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
17 Hb_000834_210 0.1874972145 - - unnamed protein product [Vitis vinifera]
18 Hb_000421_270 0.1875530424 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
19 Hb_000227_370 0.1881694008 - - sugar transporter, putative [Ricinus communis]
20 Hb_000187_110 0.1898542594 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_006788_010 Hb_006788_010 Hb_000005_230 Hb_000005_230 Hb_006788_010--Hb_000005_230 Hb_006618_080 Hb_006618_080 Hb_006788_010--Hb_006618_080 Hb_002025_350 Hb_002025_350 Hb_006788_010--Hb_002025_350 Hb_002597_010 Hb_002597_010 Hb_006788_010--Hb_002597_010 Hb_000347_230 Hb_000347_230 Hb_006788_010--Hb_000347_230 Hb_000815_280 Hb_000815_280 Hb_006788_010--Hb_000815_280 Hb_000005_230--Hb_002597_010 Hb_000005_230--Hb_006618_080 Hb_000032_560 Hb_000032_560 Hb_000005_230--Hb_000032_560 Hb_007313_010 Hb_007313_010 Hb_000005_230--Hb_007313_010 Hb_000005_230--Hb_000347_230 Hb_006618_080--Hb_000347_230 Hb_006618_080--Hb_007313_010 Hb_000723_240 Hb_000723_240 Hb_006618_080--Hb_000723_240 Hb_000589_100 Hb_000589_100 Hb_006618_080--Hb_000589_100 Hb_003734_120 Hb_003734_120 Hb_006618_080--Hb_003734_120 Hb_000421_270 Hb_000421_270 Hb_002025_350--Hb_000421_270 Hb_032631_050 Hb_032631_050 Hb_002025_350--Hb_032631_050 Hb_000227_370 Hb_000227_370 Hb_002025_350--Hb_000227_370 Hb_029584_090 Hb_029584_090 Hb_002025_350--Hb_029584_090 Hb_002025_350--Hb_000005_230 Hb_001405_150 Hb_001405_150 Hb_002025_350--Hb_001405_150 Hb_002597_010--Hb_000032_560 Hb_002016_020 Hb_002016_020 Hb_002597_010--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_002597_010--Hb_000347_230 Hb_018133_110 Hb_018133_110 Hb_002597_010--Hb_018133_110 Hb_000347_230--Hb_018133_110 Hb_001623_400 Hb_001623_400 Hb_000347_230--Hb_001623_400 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_000347_230--Hb_003734_120 Hb_131864_020 Hb_131864_020 Hb_000815_280--Hb_131864_020 Hb_000625_130 Hb_000625_130 Hb_000815_280--Hb_000625_130 Hb_025469_040 Hb_025469_040 Hb_000815_280--Hb_025469_040 Hb_000029_420 Hb_000029_420 Hb_000815_280--Hb_000029_420 Hb_000194_080 Hb_000194_080 Hb_000815_280--Hb_000194_080 Hb_111985_160 Hb_111985_160 Hb_000815_280--Hb_111985_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0180868 1.63591 3.65817 4.63217 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246026 0.570064 0.432474 13.1183 0.551321

CAGE analysis