Hb_098030_010

Information

Type -
Description -
Location Contig98030: 385-1195
Sequence    

Annotation

kegg
ID tcc:TCM_027831
description To encode a PR protein, Belongs to the plant thionin family with the following members:, putative
nr
ID KDP37195.1
description hypothetical protein JCGZ_06251 [Jatropha curcas]
swissprot
ID A8MRP4
description Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1
trembl
ID A0A067KY62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06251 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64392: 339-1147
cDNA
(Sanger)
(ID:Location)		 023_A22.ab1: 339-1104

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098030_010 0.0 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
2 Hb_012368_080 0.09575815 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
3 Hb_002809_020 0.1050269802 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
4 Hb_008418_010 0.1144973377 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
5 Hb_006637_040 0.1147764554 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
6 Hb_018591_010 0.1168036741 - - kinase, putative [Ricinus communis]
7 Hb_003768_100 0.1185173245 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
8 Hb_002301_420 0.1186814928 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
9 Hb_000347_230 0.1237851387 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
10 Hb_000540_030 0.1246659241 - - Chitinase 1 precursor, putative [Ricinus communis]
11 Hb_005144_180 0.1349547012 - - PREDICTED: protein enabled homolog [Populus euphratica]
12 Hb_164283_010 0.138404214 - - hypothetical protein RCOM_0725500 [Ricinus communis]
13 Hb_001758_120 0.1390686015 - - unnamed protein product [Vitis vinifera]
14 Hb_000194_080 0.1427686391 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
15 Hb_001242_020 0.1431728748 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
16 Hb_003226_050 0.1444771862 - - Pectinesterase-3 precursor, putative [Ricinus communis]
17 Hb_003893_100 0.1453141784 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
18 Hb_001623_400 0.1469662903 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007017_120 0.1483455362 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
20 Hb_000297_180 0.1512703394 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_098030_010 Hb_098030_010 Hb_012368_080 Hb_012368_080 Hb_098030_010--Hb_012368_080 Hb_002809_020 Hb_002809_020 Hb_098030_010--Hb_002809_020 Hb_008418_010 Hb_008418_010 Hb_098030_010--Hb_008418_010 Hb_006637_040 Hb_006637_040 Hb_098030_010--Hb_006637_040 Hb_018591_010 Hb_018591_010 Hb_098030_010--Hb_018591_010 Hb_003768_100 Hb_003768_100 Hb_098030_010--Hb_003768_100 Hb_003893_100 Hb_003893_100 Hb_012368_080--Hb_003893_100 Hb_000297_180 Hb_000297_180 Hb_012368_080--Hb_000297_180 Hb_012368_080--Hb_006637_040 Hb_012368_080--Hb_018591_010 Hb_002301_420 Hb_002301_420 Hb_012368_080--Hb_002301_420 Hb_007017_120 Hb_007017_120 Hb_002809_020--Hb_007017_120 Hb_178252_010 Hb_178252_010 Hb_002809_020--Hb_178252_010 Hb_055154_010 Hb_055154_010 Hb_002809_020--Hb_055154_010 Hb_003166_020 Hb_003166_020 Hb_002809_020--Hb_003166_020 Hb_002809_020--Hb_008418_010 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_008418_010--Hb_018591_010 Hb_008418_010--Hb_006637_040 Hb_000723_240 Hb_000723_240 Hb_008418_010--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_008418_010--Hb_001922_010 Hb_008418_010--Hb_003768_100 Hb_006637_040--Hb_164283_010 Hb_006637_040--Hb_018591_010 Hb_001758_120 Hb_001758_120 Hb_006637_040--Hb_001758_120 Hb_000797_030 Hb_000797_030 Hb_006637_040--Hb_000797_030 Hb_018591_010--Hb_164283_010 Hb_004544_070 Hb_004544_070 Hb_018591_010--Hb_004544_070 Hb_002749_070 Hb_002749_070 Hb_018591_010--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_018591_010--Hb_011145_020 Hb_003768_100--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_003768_100--Hb_003160_050 Hb_007313_010 Hb_007313_010 Hb_003768_100--Hb_007313_010 Hb_003226_050 Hb_003226_050 Hb_003768_100--Hb_003226_050 Hb_003768_100--Hb_007017_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.630418 3.13953 12.5734 32.2775 0.451848 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0912443 0 0 80.5434 1.82332

CAGE analysis