Hb_002809_020

Information

Type -
Description -
Location Contig2809: 14398-16669
Sequence    

Annotation

kegg
ID tcc:TCM_016139
description Leucoanthocyanidin dioxygenase isoform 1
nr
ID XP_012087030.1
description PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
swissprot
ID P51091
description Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1
trembl
ID A0A067JNR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20688 PE=3 SV=1
Gene Ontology
ID GO:0046872
description anthocyanidin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29325: 14424-16459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_020 0.0 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
2 Hb_007017_120 0.0977792966 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
3 Hb_178252_010 0.10206862 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
4 Hb_098030_010 0.1050269802 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
5 Hb_055154_010 0.1183272499 - - PREDICTED: laccase-7 [Jatropha curcas]
6 Hb_003166_020 0.1207493047 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
7 Hb_008418_010 0.1230902352 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
8 Hb_000194_080 0.123154464 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
9 Hb_003768_100 0.1242568297 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
10 Hb_012368_080 0.1295519765 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
11 Hb_090510_010 0.1314786107 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
12 Hb_000925_120 0.1315775881 - - Spotted leaf protein, putative [Ricinus communis]
13 Hb_116783_010 0.1345751816 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
14 Hb_032621_010 0.1386305073 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
15 Hb_000800_060 0.140005223 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
16 Hb_018591_010 0.1401382478 - - kinase, putative [Ricinus communis]
17 Hb_003226_050 0.1410930944 - - Pectinesterase-3 precursor, putative [Ricinus communis]
18 Hb_005396_010 0.151882022 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
19 Hb_000187_110 0.1546385913 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
20 Hb_001863_280 0.1546620181 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002809_020 Hb_002809_020 Hb_007017_120 Hb_007017_120 Hb_002809_020--Hb_007017_120 Hb_178252_010 Hb_178252_010 Hb_002809_020--Hb_178252_010 Hb_098030_010 Hb_098030_010 Hb_002809_020--Hb_098030_010 Hb_055154_010 Hb_055154_010 Hb_002809_020--Hb_055154_010 Hb_003166_020 Hb_003166_020 Hb_002809_020--Hb_003166_020 Hb_008418_010 Hb_008418_010 Hb_002809_020--Hb_008418_010 Hb_007017_120--Hb_008418_010 Hb_007017_120--Hb_178252_010 Hb_003768_100 Hb_003768_100 Hb_007017_120--Hb_003768_100 Hb_000723_240 Hb_000723_240 Hb_007017_120--Hb_000723_240 Hb_007017_120--Hb_003166_020 Hb_001102_060 Hb_001102_060 Hb_178252_010--Hb_001102_060 Hb_027242_010 Hb_027242_010 Hb_178252_010--Hb_027242_010 Hb_178252_010--Hb_055154_010 Hb_003480_010 Hb_003480_010 Hb_178252_010--Hb_003480_010 Hb_012368_080 Hb_012368_080 Hb_098030_010--Hb_012368_080 Hb_098030_010--Hb_008418_010 Hb_006637_040 Hb_006637_040 Hb_098030_010--Hb_006637_040 Hb_018591_010 Hb_018591_010 Hb_098030_010--Hb_018591_010 Hb_098030_010--Hb_003768_100 Hb_000925_120 Hb_000925_120 Hb_055154_010--Hb_000925_120 Hb_090510_010 Hb_090510_010 Hb_055154_010--Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_055154_010--Hb_000800_060 Hb_069151_010 Hb_069151_010 Hb_055154_010--Hb_069151_010 Hb_003020_340 Hb_003020_340 Hb_055154_010--Hb_003020_340 Hb_116783_010 Hb_116783_010 Hb_055154_010--Hb_116783_010 Hb_032621_010 Hb_032621_010 Hb_003166_020--Hb_032621_010 Hb_000917_330 Hb_000917_330 Hb_003166_020--Hb_000917_330 Hb_026650_010 Hb_026650_010 Hb_003166_020--Hb_026650_010 Hb_003166_020--Hb_000800_060 Hb_000668_070 Hb_000668_070 Hb_003166_020--Hb_000668_070 Hb_003166_020--Hb_069151_010 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_008418_010--Hb_018591_010 Hb_008418_010--Hb_006637_040 Hb_008418_010--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_008418_010--Hb_001922_010 Hb_008418_010--Hb_003768_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.42884 54.213 78.569 0 0.0597582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0336016 0.0528687 0.148619 222.723 4.24654

CAGE analysis