Hb_090510_010

Information

Type -
Description -
Location Contig90510: 1659-3027
Sequence    

Annotation

kegg
ID rcu:RCOM_0635960
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID KDP21179.1
description hypothetical protein JCGZ_21650 [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JNV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21650 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62025: 2373-2943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090510_010 0.0 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
2 Hb_000800_060 0.0158040048 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
3 Hb_005396_010 0.0386230867 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
4 Hb_124625_010 0.0642520747 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
5 Hb_069151_010 0.0867634522 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
6 Hb_055154_010 0.0873171255 - - PREDICTED: laccase-7 [Jatropha curcas]
7 Hb_000668_070 0.0880832183 - - conserved hypothetical protein [Ricinus communis]
8 Hb_050898_020 0.1025940147 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
9 Hb_003166_020 0.1085571311 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
10 Hb_032621_010 0.1217471507 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
11 Hb_116783_010 0.1278905232 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
12 Hb_002809_020 0.1314786107 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
13 Hb_002747_010 0.1340024047 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
14 Hb_026650_010 0.1364995526 - - nitrate transporter, putative [Ricinus communis]
15 Hb_000925_120 0.140021177 - - Spotted leaf protein, putative [Ricinus communis]
16 Hb_002966_030 0.1414742008 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012779_010 0.1503713972 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_153457_010 0.1564477498 - - Miraculin precursor, putative [Ricinus communis]
19 Hb_178252_010 0.1599243271 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
20 Hb_000772_070 0.1653692445 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]

Gene co-expression network

sample Hb_090510_010 Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_090510_010--Hb_000800_060 Hb_005396_010 Hb_005396_010 Hb_090510_010--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_090510_010--Hb_124625_010 Hb_069151_010 Hb_069151_010 Hb_090510_010--Hb_069151_010 Hb_055154_010 Hb_055154_010 Hb_090510_010--Hb_055154_010 Hb_000668_070 Hb_000668_070 Hb_090510_010--Hb_000668_070 Hb_000800_060--Hb_005396_010 Hb_000800_060--Hb_124625_010 Hb_000800_060--Hb_000668_070 Hb_000800_060--Hb_069151_010 Hb_050898_020 Hb_050898_020 Hb_000800_060--Hb_050898_020 Hb_005396_010--Hb_124625_010 Hb_005396_010--Hb_050898_020 Hb_005396_010--Hb_000668_070 Hb_002747_010 Hb_002747_010 Hb_005396_010--Hb_002747_010 Hb_124625_010--Hb_050898_020 Hb_124625_010--Hb_000668_070 Hb_002966_030 Hb_002966_030 Hb_124625_010--Hb_002966_030 Hb_069151_010--Hb_000668_070 Hb_069151_010--Hb_055154_010 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060 Hb_003166_020 Hb_003166_020 Hb_069151_010--Hb_003166_020 Hb_000925_120 Hb_000925_120 Hb_055154_010--Hb_000925_120 Hb_055154_010--Hb_000800_060 Hb_003020_340 Hb_003020_340 Hb_055154_010--Hb_003020_340 Hb_116783_010 Hb_116783_010 Hb_055154_010--Hb_116783_010 Hb_000668_070--Hb_050898_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0838808 0.0996124 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.427773 0

CAGE analysis