Hb_000800_060

Information

Type -
Description -
Location Contig800: 123787-126643
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02870g
description hypothetical protein
nr
ID XP_006379491.1
description hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
swissprot
ID Q07469
description Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1
trembl
ID U5G1D1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02870g PE=4 SV=1
Gene Ontology
ID GO:0003824
description bark storage protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000800_060 0.0 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
2 Hb_090510_010 0.0158040048 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
3 Hb_005396_010 0.0321800145 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
4 Hb_124625_010 0.0538093599 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
5 Hb_000668_070 0.0730255161 - - conserved hypothetical protein [Ricinus communis]
6 Hb_069151_010 0.080104324 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
7 Hb_050898_020 0.0893162886 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
8 Hb_055154_010 0.0990176394 - - PREDICTED: laccase-7 [Jatropha curcas]
9 Hb_003166_020 0.103803493 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
10 Hb_032621_010 0.1186133197 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
11 Hb_026650_010 0.1321435818 - - nitrate transporter, putative [Ricinus communis]
12 Hb_002747_010 0.1323786921 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
13 Hb_002966_030 0.1370435655 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002809_020 0.140005223 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
15 Hb_116783_010 0.1432021468 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
16 Hb_000772_070 0.1525892172 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
17 Hb_012779_010 0.1534837061 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_000925_120 0.1551116951 - - Spotted leaf protein, putative [Ricinus communis]
19 Hb_153457_010 0.1560170674 - - Miraculin precursor, putative [Ricinus communis]
20 Hb_000917_330 0.158876233 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000800_060 Hb_000800_060 Hb_090510_010 Hb_090510_010 Hb_000800_060--Hb_090510_010 Hb_005396_010 Hb_005396_010 Hb_000800_060--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_000800_060--Hb_124625_010 Hb_000668_070 Hb_000668_070 Hb_000800_060--Hb_000668_070 Hb_069151_010 Hb_069151_010 Hb_000800_060--Hb_069151_010 Hb_050898_020 Hb_050898_020 Hb_000800_060--Hb_050898_020 Hb_090510_010--Hb_005396_010 Hb_090510_010--Hb_124625_010 Hb_090510_010--Hb_069151_010 Hb_055154_010 Hb_055154_010 Hb_090510_010--Hb_055154_010 Hb_090510_010--Hb_000668_070 Hb_005396_010--Hb_124625_010 Hb_005396_010--Hb_050898_020 Hb_005396_010--Hb_000668_070 Hb_002747_010 Hb_002747_010 Hb_005396_010--Hb_002747_010 Hb_124625_010--Hb_050898_020 Hb_124625_010--Hb_000668_070 Hb_002966_030 Hb_002966_030 Hb_124625_010--Hb_002966_030 Hb_000668_070--Hb_069151_010 Hb_000668_070--Hb_050898_020 Hb_069151_010--Hb_055154_010 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060 Hb_003166_020 Hb_003166_020 Hb_069151_010--Hb_003166_020 Hb_000772_070 Hb_000772_070 Hb_050898_020--Hb_000772_070 Hb_050898_020--Hb_002966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0808759 0.0878316 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.418521 0

CAGE analysis