Hb_069151_010

Information

Type -
Description -
Location Contig69151: 43-921
Sequence    

Annotation

kegg
ID tcc:TCM_007720
description Receptor like protein 1, putative
nr
ID XP_012465210.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID A0A0D2TWJ5
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G069300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069151_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
2 Hb_000668_070 0.0674970342 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000800_060 0.080104324 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
4 Hb_090510_010 0.0867634522 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
5 Hb_055154_010 0.1050043484 - - PREDICTED: laccase-7 [Jatropha curcas]
6 Hb_140049_060 0.1051646825 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
7 Hb_003166_020 0.1071257891 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
8 Hb_005396_010 0.1085394479 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
9 Hb_003480_010 0.113652526 - - cytochrome P450 family protein [Populus trichocarpa]
10 Hb_032621_010 0.1150713878 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
11 Hb_124625_010 0.1187600929 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
12 Hb_050898_020 0.1338321282 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
13 Hb_026650_010 0.1361670946 - - nitrate transporter, putative [Ricinus communis]
14 Hb_027242_010 0.1403401682 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
15 Hb_178252_010 0.1425629908 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
16 Hb_187211_010 0.1459135007 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
17 Hb_000625_130 0.1517428661 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
18 Hb_000917_330 0.1526922571 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
19 Hb_000500_160 0.1641079246 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
20 Hb_002809_020 0.1642710861 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_069151_010 Hb_069151_010 Hb_000668_070 Hb_000668_070 Hb_069151_010--Hb_000668_070 Hb_000800_060 Hb_000800_060 Hb_069151_010--Hb_000800_060 Hb_090510_010 Hb_090510_010 Hb_069151_010--Hb_090510_010 Hb_055154_010 Hb_055154_010 Hb_069151_010--Hb_055154_010 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060 Hb_003166_020 Hb_003166_020 Hb_069151_010--Hb_003166_020 Hb_000668_070--Hb_000800_060 Hb_050898_020 Hb_050898_020 Hb_000668_070--Hb_050898_020 Hb_124625_010 Hb_124625_010 Hb_000668_070--Hb_124625_010 Hb_005396_010 Hb_005396_010 Hb_000668_070--Hb_005396_010 Hb_000668_070--Hb_090510_010 Hb_000800_060--Hb_090510_010 Hb_000800_060--Hb_005396_010 Hb_000800_060--Hb_124625_010 Hb_000800_060--Hb_050898_020 Hb_090510_010--Hb_005396_010 Hb_090510_010--Hb_124625_010 Hb_090510_010--Hb_055154_010 Hb_000925_120 Hb_000925_120 Hb_055154_010--Hb_000925_120 Hb_055154_010--Hb_000800_060 Hb_003020_340 Hb_003020_340 Hb_055154_010--Hb_003020_340 Hb_116783_010 Hb_116783_010 Hb_055154_010--Hb_116783_010 Hb_000500_160 Hb_000500_160 Hb_140049_060--Hb_000500_160 Hb_008775_050 Hb_008775_050 Hb_140049_060--Hb_008775_050 Hb_140049_060--Hb_000668_070 Hb_000057_210 Hb_000057_210 Hb_140049_060--Hb_000057_210 Hb_187211_010 Hb_187211_010 Hb_140049_060--Hb_187211_010 Hb_032621_010 Hb_032621_010 Hb_003166_020--Hb_032621_010 Hb_000917_330 Hb_000917_330 Hb_003166_020--Hb_000917_330 Hb_026650_010 Hb_026650_010 Hb_003166_020--Hb_026650_010 Hb_003166_020--Hb_000800_060 Hb_003166_020--Hb_000668_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0401836 0.0232843 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.132546 0

CAGE analysis