Hb_008775_050

Information

Type -
Description -
Location Contig8775: 48200-49646
Sequence    

Annotation

kegg
ID egr:104450033
description probable glutathione S-transferase
nr
ID XP_012065461.1
description PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
swissprot
ID P49332
description Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1
trembl
ID A0A067L5G6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24120 PE=3 SV=1
Gene Ontology
ID GO:0004364
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61284: 48065-49687
cDNA
(Sanger)
(ID:Location)		 002_H09.ab1: 48133-49687 , 026_M16.ab1: 48237-49687 , 044_P21.ab1: 48227-49687

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008775_050 0.0 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
2 Hb_000500_160 0.0594325386 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
3 Hb_000560_050 0.0984377071 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
4 Hb_014749_010 0.0994871827 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
5 Hb_038135_010 0.1013809674 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
6 Hb_007320_050 0.1014594674 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
7 Hb_019708_010 0.102636386 - - -
8 Hb_004162_310 0.1035036542 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_140049_060 0.1071560541 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
10 Hb_002989_030 0.1083732619 - - PREDICTED: protein GAST1-like [Populus euphratica]
11 Hb_119748_010 0.1099167175 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_002659_020 0.1146506012 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
13 Hb_009659_060 0.1157414838 - - cell wall invertase [Manihot esculenta]
14 Hb_006533_010 0.119866354 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
15 Hb_005066_060 0.1312617435 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
16 Hb_012136_010 0.1316090184 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
17 Hb_005389_180 0.1328370814 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
18 Hb_000383_030 0.1341601671 - - -
19 Hb_000905_020 0.1408724764 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
20 Hb_000069_050 0.1424322521 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]

Gene co-expression network

sample Hb_008775_050 Hb_008775_050 Hb_000500_160 Hb_000500_160 Hb_008775_050--Hb_000500_160 Hb_000560_050 Hb_000560_050 Hb_008775_050--Hb_000560_050 Hb_014749_010 Hb_014749_010 Hb_008775_050--Hb_014749_010 Hb_038135_010 Hb_038135_010 Hb_008775_050--Hb_038135_010 Hb_007320_050 Hb_007320_050 Hb_008775_050--Hb_007320_050 Hb_019708_010 Hb_019708_010 Hb_008775_050--Hb_019708_010 Hb_140049_060 Hb_140049_060 Hb_000500_160--Hb_140049_060 Hb_000500_160--Hb_014749_010 Hb_000500_160--Hb_007320_050 Hb_004162_310 Hb_004162_310 Hb_000500_160--Hb_004162_310 Hb_002659_020 Hb_002659_020 Hb_000500_160--Hb_002659_020 Hb_000560_050--Hb_038135_010 Hb_000560_050--Hb_019708_010 Hb_119748_010 Hb_119748_010 Hb_000560_050--Hb_119748_010 Hb_000560_050--Hb_014749_010 Hb_000560_050--Hb_007320_050 Hb_006533_010 Hb_006533_010 Hb_000560_050--Hb_006533_010 Hb_014749_010--Hb_007320_050 Hb_014749_010--Hb_004162_310 Hb_014749_010--Hb_002659_020 Hb_009659_060 Hb_009659_060 Hb_014749_010--Hb_009659_060 Hb_014749_010--Hb_038135_010 Hb_038135_010--Hb_019708_010 Hb_038135_010--Hb_119748_010 Hb_038135_010--Hb_006533_010 Hb_005066_060 Hb_005066_060 Hb_038135_010--Hb_005066_060 Hb_007320_050--Hb_004162_310 Hb_007320_050--Hb_002659_020 Hb_007320_050--Hb_009659_060 Hb_007320_050--Hb_038135_010 Hb_019708_010--Hb_119748_010 Hb_019708_010--Hb_006533_010 Hb_019708_010--Hb_005066_060 Hb_012136_010 Hb_012136_010 Hb_019708_010--Hb_012136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.192902 23.8414 1.5453 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 80.6801 0.248882

CAGE analysis