Hb_000500_160

Information

Type -
Description -
Location Contig500: 105710-110176
Sequence    

Annotation

kegg
ID cic:CICLE_v10024324mg
description hypothetical protein
nr
ID KDO41540.1
description hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID K7N0P2
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016491
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_160 0.0 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
2 Hb_008775_050 0.0594325386 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
3 Hb_140049_060 0.0642138262 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
4 Hb_014749_010 0.1099132989 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
5 Hb_007320_050 0.1100108101 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
6 Hb_004162_310 0.1104881584 - - tonoplast intrinsic protein, putative [Ricinus communis]
7 Hb_002659_020 0.1157610839 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
8 Hb_009659_060 0.116411482 - - cell wall invertase [Manihot esculenta]
9 Hb_000560_050 0.1176602878 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
10 Hb_038135_010 0.122672082 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
11 Hb_019708_010 0.1245100949 - - -
12 Hb_002989_030 0.1250906779 - - PREDICTED: protein GAST1-like [Populus euphratica]
13 Hb_005389_180 0.1281865942 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
14 Hb_000383_030 0.1291883708 - - -
15 Hb_119748_010 0.1339241781 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_000905_020 0.1344116297 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
17 Hb_004324_140 0.1362439129 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
18 Hb_184964_010 0.1366683654 - - -
19 Hb_002094_060 0.1372396446 - - -
20 Hb_005204_060 0.1379645026 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000500_160 Hb_000500_160 Hb_008775_050 Hb_008775_050 Hb_000500_160--Hb_008775_050 Hb_140049_060 Hb_140049_060 Hb_000500_160--Hb_140049_060 Hb_014749_010 Hb_014749_010 Hb_000500_160--Hb_014749_010 Hb_007320_050 Hb_007320_050 Hb_000500_160--Hb_007320_050 Hb_004162_310 Hb_004162_310 Hb_000500_160--Hb_004162_310 Hb_002659_020 Hb_002659_020 Hb_000500_160--Hb_002659_020 Hb_000560_050 Hb_000560_050 Hb_008775_050--Hb_000560_050 Hb_008775_050--Hb_014749_010 Hb_038135_010 Hb_038135_010 Hb_008775_050--Hb_038135_010 Hb_008775_050--Hb_007320_050 Hb_019708_010 Hb_019708_010 Hb_008775_050--Hb_019708_010 Hb_069151_010 Hb_069151_010 Hb_140049_060--Hb_069151_010 Hb_140049_060--Hb_008775_050 Hb_000668_070 Hb_000668_070 Hb_140049_060--Hb_000668_070 Hb_000057_210 Hb_000057_210 Hb_140049_060--Hb_000057_210 Hb_187211_010 Hb_187211_010 Hb_140049_060--Hb_187211_010 Hb_014749_010--Hb_007320_050 Hb_014749_010--Hb_004162_310 Hb_014749_010--Hb_002659_020 Hb_014749_010--Hb_000560_050 Hb_009659_060 Hb_009659_060 Hb_014749_010--Hb_009659_060 Hb_014749_010--Hb_038135_010 Hb_007320_050--Hb_004162_310 Hb_007320_050--Hb_002659_020 Hb_007320_050--Hb_009659_060 Hb_007320_050--Hb_000560_050 Hb_007320_050--Hb_038135_010 Hb_004162_310--Hb_002659_020 Hb_004162_310--Hb_009659_060 Hb_004162_310--Hb_000560_050 Hb_005389_180 Hb_005389_180 Hb_004162_310--Hb_005389_180 Hb_002659_020--Hb_009659_060 Hb_002659_020--Hb_005389_180 Hb_000383_030 Hb_000383_030 Hb_002659_020--Hb_000383_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.200401 0.019412 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.590993 0

CAGE analysis