Hb_038135_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig38135: 2708-3145
Sequence    

Annotation

kegg
ID rcu:RCOM_0733120
description Transcriptional regulator SUPERMAN, putative
nr
ID XP_002520514.1
description Transcriptional regulator SUPERMAN, putative [Ricinus communis]
swissprot
ID Q9LHS9
description Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2
trembl
ID B9S3E5
description Transcriptional regulator SUPERMAN, putative OS=Ricinus communis GN=RCOM_0733120 PE=4 SV=1
Gene Ontology
ID GO:0046872
description transcriptional regulator rabbit ears

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038135_010 0.0 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
2 Hb_019708_010 0.0040500175 - - -
3 Hb_000560_050 0.0125631346 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
4 Hb_119748_010 0.0222170901 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_006533_010 0.0410162619 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
6 Hb_014749_010 0.0524929535 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
7 Hb_005066_060 0.0591387977 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
8 Hb_012136_010 0.0596569067 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_007320_050 0.0600618652 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
10 Hb_004162_310 0.0663923771 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_002659_020 0.0913710478 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
12 Hb_005563_020 0.0920641594 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
13 Hb_009659_060 0.0933937331 - - cell wall invertase [Manihot esculenta]
14 Hb_008775_050 0.1013809674 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
15 Hb_123560_010 0.1140010255 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
16 Hb_005389_180 0.1210185018 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
17 Hb_000500_160 0.122672082 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
18 Hb_000383_030 0.1229453624 - - -
19 Hb_078903_010 0.1317214387 - - Osmotin precursor, putative [Ricinus communis]
20 Hb_000905_020 0.1324256068 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_038135_010 Hb_038135_010 Hb_019708_010 Hb_019708_010 Hb_038135_010--Hb_019708_010 Hb_000560_050 Hb_000560_050 Hb_038135_010--Hb_000560_050 Hb_119748_010 Hb_119748_010 Hb_038135_010--Hb_119748_010 Hb_006533_010 Hb_006533_010 Hb_038135_010--Hb_006533_010 Hb_014749_010 Hb_014749_010 Hb_038135_010--Hb_014749_010 Hb_005066_060 Hb_005066_060 Hb_038135_010--Hb_005066_060 Hb_019708_010--Hb_000560_050 Hb_019708_010--Hb_119748_010 Hb_019708_010--Hb_006533_010 Hb_019708_010--Hb_005066_060 Hb_012136_010 Hb_012136_010 Hb_019708_010--Hb_012136_010 Hb_000560_050--Hb_119748_010 Hb_000560_050--Hb_014749_010 Hb_007320_050 Hb_007320_050 Hb_000560_050--Hb_007320_050 Hb_000560_050--Hb_006533_010 Hb_119748_010--Hb_006533_010 Hb_119748_010--Hb_005066_060 Hb_119748_010--Hb_012136_010 Hb_006533_010--Hb_005066_060 Hb_006533_010--Hb_012136_010 Hb_005563_020 Hb_005563_020 Hb_006533_010--Hb_005563_020 Hb_014749_010--Hb_007320_050 Hb_004162_310 Hb_004162_310 Hb_014749_010--Hb_004162_310 Hb_002659_020 Hb_002659_020 Hb_014749_010--Hb_002659_020 Hb_009659_060 Hb_009659_060 Hb_014749_010--Hb_009659_060 Hb_005066_060--Hb_012136_010 Hb_005066_060--Hb_005563_020 Hb_123560_010 Hb_123560_010 Hb_005066_060--Hb_123560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.111132 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.446656 0

CAGE analysis