Hb_006533_010

Information

Type -
Description -
Location Contig6533: 11721-12653
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03350g
description POPTRDRAFT_241047; hypothetical protein
nr
ID XP_011003818.1
description PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9I890
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03350g PE=4 SV=2
Gene Ontology
ID GO:0008233
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006533_010 0.0 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
2 Hb_005066_060 0.0181616646 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
3 Hb_012136_010 0.0186812861 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_119748_010 0.0188133736 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_019708_010 0.0369711645 - - -
6 Hb_038135_010 0.0410162619 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
7 Hb_005563_020 0.0512310976 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
8 Hb_000560_050 0.0535579432 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
9 Hb_123560_010 0.0733239496 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
10 Hb_078903_010 0.0912105131 - - Osmotin precursor, putative [Ricinus communis]
11 Hb_014749_010 0.0933635819 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
12 Hb_007320_050 0.1009003761 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
13 Hb_004162_310 0.1072021295 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_001652_060 0.1109187891 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
15 Hb_008775_050 0.119866354 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
16 Hb_041362_010 0.1242156319 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
17 Hb_002659_020 0.1320516334 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
18 Hb_009659_060 0.1340628284 - - cell wall invertase [Manihot esculenta]
19 Hb_002184_040 0.139676264 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
20 Hb_001142_040 0.1411257356 - - PREDICTED: protein YLS9 [Jatropha curcas]

Gene co-expression network

sample Hb_006533_010 Hb_006533_010 Hb_005066_060 Hb_005066_060 Hb_006533_010--Hb_005066_060 Hb_012136_010 Hb_012136_010 Hb_006533_010--Hb_012136_010 Hb_119748_010 Hb_119748_010 Hb_006533_010--Hb_119748_010 Hb_019708_010 Hb_019708_010 Hb_006533_010--Hb_019708_010 Hb_038135_010 Hb_038135_010 Hb_006533_010--Hb_038135_010 Hb_005563_020 Hb_005563_020 Hb_006533_010--Hb_005563_020 Hb_005066_060--Hb_012136_010 Hb_005066_060--Hb_005563_020 Hb_005066_060--Hb_119748_010 Hb_005066_060--Hb_019708_010 Hb_123560_010 Hb_123560_010 Hb_005066_060--Hb_123560_010 Hb_012136_010--Hb_005563_020 Hb_012136_010--Hb_119748_010 Hb_012136_010--Hb_123560_010 Hb_012136_010--Hb_019708_010 Hb_119748_010--Hb_019708_010 Hb_119748_010--Hb_038135_010 Hb_000560_050 Hb_000560_050 Hb_119748_010--Hb_000560_050 Hb_019708_010--Hb_038135_010 Hb_019708_010--Hb_000560_050 Hb_038135_010--Hb_000560_050 Hb_014749_010 Hb_014749_010 Hb_038135_010--Hb_014749_010 Hb_038135_010--Hb_005066_060 Hb_005563_020--Hb_123560_010 Hb_078903_010 Hb_078903_010 Hb_005563_020--Hb_078903_010 Hb_001652_060 Hb_001652_060 Hb_005563_020--Hb_001652_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0558499 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.288683 0

CAGE analysis