Hb_001652_060

Information

Type -
Description -
Location Contig1652: 57946-59146
Sequence    

Annotation

kegg
ID mdm:103404034
description uncharacterized LOC103404034
nr
ID XP_008341112.1
description PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
swissprot
ID -
description -
trembl
ID B8AVP6
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14959 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15221: 53397-64547 , PASA_asmbl_15222: 57367-57604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_060 0.0 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
2 Hb_078903_010 0.0200014455 - - Osmotin precursor, putative [Ricinus communis]
3 Hb_002184_040 0.0295062346 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
4 Hb_001142_040 0.0310049064 - - PREDICTED: protein YLS9 [Jatropha curcas]
5 Hb_003857_010 0.0375595375 - - conserved hypothetical protein [Ricinus communis]
6 Hb_123560_010 0.0380237042 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
7 Hb_007926_020 0.0460872644 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
8 Hb_005563_020 0.060137168 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
9 Hb_012136_010 0.0924711099 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_005066_060 0.0929852243 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
11 Hb_015146_010 0.1096456943 - - -
12 Hb_006533_010 0.1109187891 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
13 Hb_119748_010 0.1294295293 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
14 Hb_000836_400 0.1304305829 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
15 Hb_148986_010 0.1444904353 - - unnamed protein product [Vitis vinifera]
16 Hb_010697_030 0.1447741694 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
17 Hb_001019_220 0.1452264456 - - hypothetical protein POPTR_0004s19470g [Populus trichocarpa]
18 Hb_019708_010 0.1472397558 - - -
19 Hb_020480_050 0.1473214798 - - putative wall-associated kinase family protein [Populus trichocarpa]
20 Hb_000684_060 0.1487254374 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]

Gene co-expression network

sample Hb_001652_060 Hb_001652_060 Hb_078903_010 Hb_078903_010 Hb_001652_060--Hb_078903_010 Hb_002184_040 Hb_002184_040 Hb_001652_060--Hb_002184_040 Hb_001142_040 Hb_001142_040 Hb_001652_060--Hb_001142_040 Hb_003857_010 Hb_003857_010 Hb_001652_060--Hb_003857_010 Hb_123560_010 Hb_123560_010 Hb_001652_060--Hb_123560_010 Hb_007926_020 Hb_007926_020 Hb_001652_060--Hb_007926_020 Hb_078903_010--Hb_123560_010 Hb_005563_020 Hb_005563_020 Hb_078903_010--Hb_005563_020 Hb_078903_010--Hb_002184_040 Hb_078903_010--Hb_001142_040 Hb_078903_010--Hb_003857_010 Hb_002184_040--Hb_001142_040 Hb_002184_040--Hb_003857_010 Hb_002184_040--Hb_007926_020 Hb_002184_040--Hb_123560_010 Hb_001142_040--Hb_003857_010 Hb_001142_040--Hb_007926_020 Hb_001142_040--Hb_123560_010 Hb_003857_010--Hb_007926_020 Hb_003857_010--Hb_123560_010 Hb_123560_010--Hb_005563_020 Hb_012136_010 Hb_012136_010 Hb_123560_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_123560_010--Hb_005066_060 Hb_007926_020--Hb_078903_010 Hb_007926_020--Hb_123560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0352172 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.416265 0

CAGE analysis