Hb_002184_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2184: 57407-58207
Sequence    

Annotation

kegg
ID rcu:RCOM_1590090
description transcription factor, putative
nr
ID XP_002510202.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FHA7
description Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1
trembl
ID B9R7A9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1590090 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor hec2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22512: 57797-58092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002184_040 0.0 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
2 Hb_001142_040 0.0015020704 - - PREDICTED: protein YLS9 [Jatropha curcas]
3 Hb_003857_010 0.0080758968 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007926_020 0.0166397079 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
5 Hb_001652_060 0.0295062346 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
6 Hb_078903_010 0.0494458743 - - Osmotin precursor, putative [Ricinus communis]
7 Hb_123560_010 0.0673780835 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
8 Hb_005563_020 0.0893445555 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
9 Hb_015146_010 0.1039273083 - - -
10 Hb_148986_010 0.1201412724 - - unnamed protein product [Vitis vinifera]
11 Hb_012136_010 0.1214068555 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
12 Hb_000684_060 0.121886724 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
13 Hb_005066_060 0.121916204 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
14 Hb_001019_220 0.1243908906 - - hypothetical protein POPTR_0004s19470g [Populus trichocarpa]
15 Hb_020480_050 0.1314445174 - - putative wall-associated kinase family protein [Populus trichocarpa]
16 Hb_000836_400 0.1326838534 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
17 Hb_000329_160 0.1340056721 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
18 Hb_010697_030 0.1368646572 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_019392_010 0.1389444674 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
20 Hb_006533_010 0.139676264 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]

Gene co-expression network

sample Hb_002184_040 Hb_002184_040 Hb_001142_040 Hb_001142_040 Hb_002184_040--Hb_001142_040 Hb_003857_010 Hb_003857_010 Hb_002184_040--Hb_003857_010 Hb_007926_020 Hb_007926_020 Hb_002184_040--Hb_007926_020 Hb_001652_060 Hb_001652_060 Hb_002184_040--Hb_001652_060 Hb_078903_010 Hb_078903_010 Hb_002184_040--Hb_078903_010 Hb_123560_010 Hb_123560_010 Hb_002184_040--Hb_123560_010 Hb_001142_040--Hb_003857_010 Hb_001142_040--Hb_007926_020 Hb_001142_040--Hb_001652_060 Hb_001142_040--Hb_078903_010 Hb_001142_040--Hb_123560_010 Hb_003857_010--Hb_007926_020 Hb_003857_010--Hb_001652_060 Hb_003857_010--Hb_078903_010 Hb_003857_010--Hb_123560_010 Hb_007926_020--Hb_001652_060 Hb_007926_020--Hb_078903_010 Hb_007926_020--Hb_123560_010 Hb_001652_060--Hb_078903_010 Hb_001652_060--Hb_123560_010 Hb_078903_010--Hb_123560_010 Hb_005563_020 Hb_005563_020 Hb_078903_010--Hb_005563_020 Hb_123560_010--Hb_005563_020 Hb_012136_010 Hb_012136_010 Hb_123560_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_123560_010--Hb_005066_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0220504 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.343071 0

CAGE analysis