Hb_001142_040

Information

Type -
Description -
Location Contig1142: 81985-82637
Sequence    

Annotation

kegg
ID rcu:RCOM_1222700
description hypothetical protein
nr
ID XP_012079609.1
description PREDICTED: protein YLS9 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LM18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17432 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001142_040 0.0 - - PREDICTED: protein YLS9 [Jatropha curcas]
2 Hb_002184_040 0.0015020704 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
3 Hb_003857_010 0.0065740492 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007926_020 0.0151387251 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
5 Hb_001652_060 0.0310049064 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
6 Hb_078903_010 0.0509391575 - - Osmotin precursor, putative [Ricinus communis]
7 Hb_123560_010 0.0688648386 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
8 Hb_005563_020 0.0908215639 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
9 Hb_015146_010 0.1038494011 - - -
10 Hb_148986_010 0.1189388636 - - unnamed protein product [Vitis vinifera]
11 Hb_000684_060 0.1205219865 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
12 Hb_012136_010 0.1228669922 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_005066_060 0.1233760523 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
14 Hb_001019_220 0.1234058163 - - hypothetical protein POPTR_0004s19470g [Populus trichocarpa]
15 Hb_020480_050 0.130750693 - - putative wall-associated kinase family protein [Populus trichocarpa]
16 Hb_000329_160 0.1328353087 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
17 Hb_000836_400 0.1329695173 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
18 Hb_010697_030 0.1366152222 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_019392_010 0.1378403243 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
20 Hb_006925_010 0.1388698548 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]

Gene co-expression network

sample Hb_001142_040 Hb_001142_040 Hb_002184_040 Hb_002184_040 Hb_001142_040--Hb_002184_040 Hb_003857_010 Hb_003857_010 Hb_001142_040--Hb_003857_010 Hb_007926_020 Hb_007926_020 Hb_001142_040--Hb_007926_020 Hb_001652_060 Hb_001652_060 Hb_001142_040--Hb_001652_060 Hb_078903_010 Hb_078903_010 Hb_001142_040--Hb_078903_010 Hb_123560_010 Hb_123560_010 Hb_001142_040--Hb_123560_010 Hb_002184_040--Hb_003857_010 Hb_002184_040--Hb_007926_020 Hb_002184_040--Hb_001652_060 Hb_002184_040--Hb_078903_010 Hb_002184_040--Hb_123560_010 Hb_003857_010--Hb_007926_020 Hb_003857_010--Hb_001652_060 Hb_003857_010--Hb_078903_010 Hb_003857_010--Hb_123560_010 Hb_007926_020--Hb_001652_060 Hb_007926_020--Hb_078903_010 Hb_007926_020--Hb_123560_010 Hb_001652_060--Hb_078903_010 Hb_001652_060--Hb_123560_010 Hb_078903_010--Hb_123560_010 Hb_005563_020 Hb_005563_020 Hb_078903_010--Hb_005563_020 Hb_123560_010--Hb_005563_020 Hb_012136_010 Hb_012136_010 Hb_123560_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_123560_010--Hb_005066_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0372957 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.588974 0

CAGE analysis