Hb_005563_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig5563: 43570-44957
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16810g
description POPTRDRAFT_855496; hypothetical protein
nr
ID XP_002305454.2
description hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
swissprot
ID Q9LQZ7
description B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1
trembl
ID B9H0W3
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s16810g PE=4 SV=2
Gene Ontology
ID GO:0005622
description b-box zinc finger protein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005563_020 0.0 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
2 Hb_123560_010 0.0221935376 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
3 Hb_012136_010 0.0325832389 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_005066_060 0.0331024118 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
5 Hb_078903_010 0.0402156917 - - Osmotin precursor, putative [Ricinus communis]
6 Hb_006533_010 0.0512310976 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
7 Hb_001652_060 0.060137168 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
8 Hb_119748_010 0.0699776392 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
9 Hb_019708_010 0.0880430439 - - -
10 Hb_002184_040 0.0893445555 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
11 Hb_001142_040 0.0908215639 - - PREDICTED: protein YLS9 [Jatropha curcas]
12 Hb_038135_010 0.0920641594 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
13 Hb_003857_010 0.0972734159 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000560_050 0.1045242019 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
15 Hb_007926_020 0.1056470927 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
16 Hb_041362_010 0.1267791809 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
17 Hb_015146_010 0.140575626 - - -
18 Hb_014749_010 0.1440063197 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
19 Hb_000836_400 0.1452424356 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
20 Hb_000069_050 0.150009277 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]

Gene co-expression network

sample Hb_005563_020 Hb_005563_020 Hb_123560_010 Hb_123560_010 Hb_005563_020--Hb_123560_010 Hb_012136_010 Hb_012136_010 Hb_005563_020--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_005563_020--Hb_005066_060 Hb_078903_010 Hb_078903_010 Hb_005563_020--Hb_078903_010 Hb_006533_010 Hb_006533_010 Hb_005563_020--Hb_006533_010 Hb_001652_060 Hb_001652_060 Hb_005563_020--Hb_001652_060 Hb_123560_010--Hb_078903_010 Hb_123560_010--Hb_001652_060 Hb_123560_010--Hb_012136_010 Hb_123560_010--Hb_005066_060 Hb_002184_040 Hb_002184_040 Hb_123560_010--Hb_002184_040 Hb_012136_010--Hb_005066_060 Hb_012136_010--Hb_006533_010 Hb_119748_010 Hb_119748_010 Hb_012136_010--Hb_119748_010 Hb_019708_010 Hb_019708_010 Hb_012136_010--Hb_019708_010 Hb_005066_060--Hb_006533_010 Hb_005066_060--Hb_119748_010 Hb_005066_060--Hb_019708_010 Hb_078903_010--Hb_001652_060 Hb_078903_010--Hb_002184_040 Hb_001142_040 Hb_001142_040 Hb_078903_010--Hb_001142_040 Hb_003857_010 Hb_003857_010 Hb_078903_010--Hb_003857_010 Hb_006533_010--Hb_119748_010 Hb_006533_010--Hb_019708_010 Hb_038135_010 Hb_038135_010 Hb_006533_010--Hb_038135_010 Hb_001652_060--Hb_002184_040 Hb_001652_060--Hb_001142_040 Hb_001652_060--Hb_003857_010 Hb_007926_020 Hb_007926_020 Hb_001652_060--Hb_007926_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0553484 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.405243 0

CAGE analysis