Hb_019708_010

Information

Type -
Description -
Location Contig19708: 10791-13086
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019708_010 0.0 - - -
2 Hb_038135_010 0.0040500175 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
3 Hb_000560_050 0.0166125362 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
4 Hb_119748_010 0.0181683388 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_006533_010 0.0369711645 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
6 Hb_005066_060 0.0550997078 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
7 Hb_012136_010 0.0556180268 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_014749_010 0.0565347838 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
9 Hb_007320_050 0.0641013931 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
10 Hb_004162_310 0.0704297861 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_005563_020 0.0880430439 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
12 Hb_002659_020 0.095398489 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
13 Hb_009659_060 0.097420261 - - cell wall invertase [Manihot esculenta]
14 Hb_008775_050 0.102636386 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
15 Hb_123560_010 0.1099976298 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
16 Hb_000500_160 0.1245100949 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
17 Hb_005389_180 0.1250311048 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
18 Hb_000383_030 0.1269568982 - - -
19 Hb_078903_010 0.1277361615 - - Osmotin precursor, putative [Ricinus communis]
20 Hb_041362_010 0.1348071879 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]

Gene co-expression network

sample Hb_019708_010 Hb_019708_010 Hb_038135_010 Hb_038135_010 Hb_019708_010--Hb_038135_010 Hb_000560_050 Hb_000560_050 Hb_019708_010--Hb_000560_050 Hb_119748_010 Hb_119748_010 Hb_019708_010--Hb_119748_010 Hb_006533_010 Hb_006533_010 Hb_019708_010--Hb_006533_010 Hb_005066_060 Hb_005066_060 Hb_019708_010--Hb_005066_060 Hb_012136_010 Hb_012136_010 Hb_019708_010--Hb_012136_010 Hb_038135_010--Hb_000560_050 Hb_038135_010--Hb_119748_010 Hb_038135_010--Hb_006533_010 Hb_014749_010 Hb_014749_010 Hb_038135_010--Hb_014749_010 Hb_038135_010--Hb_005066_060 Hb_000560_050--Hb_119748_010 Hb_000560_050--Hb_014749_010 Hb_007320_050 Hb_007320_050 Hb_000560_050--Hb_007320_050 Hb_000560_050--Hb_006533_010 Hb_119748_010--Hb_006533_010 Hb_119748_010--Hb_005066_060 Hb_119748_010--Hb_012136_010 Hb_006533_010--Hb_005066_060 Hb_006533_010--Hb_012136_010 Hb_005563_020 Hb_005563_020 Hb_006533_010--Hb_005563_020 Hb_005066_060--Hb_012136_010 Hb_005066_060--Hb_005563_020 Hb_123560_010 Hb_123560_010 Hb_005066_060--Hb_123560_010 Hb_012136_010--Hb_005563_020 Hb_012136_010--Hb_123560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0809967 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.333433 0

CAGE analysis