Hb_123560_010

Information

Type -
Description -
Location Contig123560: 11226-11489
Sequence    

Annotation

kegg
ID rcu:RCOM_1153880
description hypothetical protein
nr
ID KDP32002.1
description hypothetical protein JCGZ_12463 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12463 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 044_N15.ab1: 10988-11566

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123560_010 0.0 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
2 Hb_078903_010 0.018046337 - - Osmotin precursor, putative [Ricinus communis]
3 Hb_005563_020 0.0221935376 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
4 Hb_001652_060 0.0380237042 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
5 Hb_012136_010 0.054726881 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
6 Hb_005066_060 0.0552448409 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
7 Hb_002184_040 0.0673780835 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
8 Hb_001142_040 0.0688648386 - - PREDICTED: protein YLS9 [Jatropha curcas]
9 Hb_006533_010 0.0733239496 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
10 Hb_003857_010 0.0753621139 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007926_020 0.0838019279 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
12 Hb_119748_010 0.0920057907 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
13 Hb_019708_010 0.1099976298 - - -
14 Hb_038135_010 0.1140010255 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
15 Hb_000560_050 0.1264033225 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
16 Hb_015146_010 0.1268973596 - - -
17 Hb_041362_010 0.1339905483 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
18 Hb_000836_400 0.1370049562 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
19 Hb_000069_050 0.1533062736 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
20 Hb_001124_150 0.1581126344 - - -

Gene co-expression network

sample Hb_123560_010 Hb_123560_010 Hb_078903_010 Hb_078903_010 Hb_123560_010--Hb_078903_010 Hb_005563_020 Hb_005563_020 Hb_123560_010--Hb_005563_020 Hb_001652_060 Hb_001652_060 Hb_123560_010--Hb_001652_060 Hb_012136_010 Hb_012136_010 Hb_123560_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_123560_010--Hb_005066_060 Hb_002184_040 Hb_002184_040 Hb_123560_010--Hb_002184_040 Hb_078903_010--Hb_001652_060 Hb_078903_010--Hb_005563_020 Hb_078903_010--Hb_002184_040 Hb_001142_040 Hb_001142_040 Hb_078903_010--Hb_001142_040 Hb_003857_010 Hb_003857_010 Hb_078903_010--Hb_003857_010 Hb_005563_020--Hb_012136_010 Hb_005563_020--Hb_005066_060 Hb_006533_010 Hb_006533_010 Hb_005563_020--Hb_006533_010 Hb_005563_020--Hb_001652_060 Hb_001652_060--Hb_002184_040 Hb_001652_060--Hb_001142_040 Hb_001652_060--Hb_003857_010 Hb_007926_020 Hb_007926_020 Hb_001652_060--Hb_007926_020 Hb_012136_010--Hb_005066_060 Hb_012136_010--Hb_006533_010 Hb_119748_010 Hb_119748_010 Hb_012136_010--Hb_119748_010 Hb_019708_010 Hb_019708_010 Hb_012136_010--Hb_019708_010 Hb_005066_060--Hb_006533_010 Hb_005066_060--Hb_119748_010 Hb_005066_060--Hb_019708_010 Hb_002184_040--Hb_001142_040 Hb_002184_040--Hb_003857_010 Hb_002184_040--Hb_007926_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.204296 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.76582 0

CAGE analysis