Hb_005389_180

Information

Type -
Description -
Location Contig5389: 185292-186113
Sequence    

Annotation

kegg
ID cit:102610398
description putative ribonuclease H protein At1g65750-like
nr
ID XP_012435673.1
description PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID B9T188
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0495440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_180 0.0 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
2 Hb_000383_030 0.001941612 - - -
3 Hb_000905_020 0.0115000712 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
4 Hb_004324_140 0.014669099 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
5 Hb_184964_010 0.0153917737 - - -
6 Hb_002094_060 0.0163580405 - - -
7 Hb_005204_060 0.0175738735 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002289_030 0.0259083941 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]
9 Hb_009398_010 0.0272131026 - - Putative pectate lyase 2 [Glycine soja]
10 Hb_009659_060 0.0277915665 - - cell wall invertase [Manihot esculenta]
11 Hb_002659_020 0.0298230474 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
12 Hb_004162_310 0.054869076 - - tonoplast intrinsic protein, putative [Ricinus communis]
13 Hb_007320_050 0.0612039842 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
14 Hb_000022_210 0.0624176083 - - PREDICTED: uncharacterized protein LOC105638395 [Jatropha curcas]
15 Hb_014749_010 0.0687710667 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
16 Hb_000560_050 0.108553657 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
17 Hb_005316_010 0.1195805221 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_038135_010 0.1210185018 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
19 Hb_019708_010 0.1250311048 - - -
20 Hb_000500_160 0.1281865942 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_005389_180 Hb_005389_180 Hb_000383_030 Hb_000383_030 Hb_005389_180--Hb_000383_030 Hb_000905_020 Hb_000905_020 Hb_005389_180--Hb_000905_020 Hb_004324_140 Hb_004324_140 Hb_005389_180--Hb_004324_140 Hb_184964_010 Hb_184964_010 Hb_005389_180--Hb_184964_010 Hb_002094_060 Hb_002094_060 Hb_005389_180--Hb_002094_060 Hb_005204_060 Hb_005204_060 Hb_005389_180--Hb_005204_060 Hb_000383_030--Hb_000905_020 Hb_000383_030--Hb_004324_140 Hb_000383_030--Hb_184964_010 Hb_000383_030--Hb_002094_060 Hb_000383_030--Hb_005204_060 Hb_000905_020--Hb_004324_140 Hb_000905_020--Hb_184964_010 Hb_000905_020--Hb_002094_060 Hb_000905_020--Hb_005204_060 Hb_004324_140--Hb_184964_010 Hb_004324_140--Hb_002094_060 Hb_004324_140--Hb_005204_060 Hb_002289_030 Hb_002289_030 Hb_004324_140--Hb_002289_030 Hb_009398_010 Hb_009398_010 Hb_004324_140--Hb_009398_010 Hb_184964_010--Hb_002094_060 Hb_184964_010--Hb_005204_060 Hb_184964_010--Hb_002289_030 Hb_184964_010--Hb_009398_010 Hb_002094_060--Hb_005204_060 Hb_002094_060--Hb_002289_030 Hb_002094_060--Hb_009398_010 Hb_005204_060--Hb_002289_030 Hb_005204_060--Hb_009398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.127745 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.266499 0

CAGE analysis