Hb_004324_140

Information

Type -
Description -
Location Contig4324: 101669-102953
Sequence    

Annotation

kegg
ID rcu:RCOM_0716290
description hypothetical protein
nr
ID XP_012090111.1
description PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25998 PE=4 SV=1
Gene Ontology
ID GO:0000166
description general transcription factor iif subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_140 0.0 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
2 Hb_184964_010 0.0007227451 - - -
3 Hb_002094_060 0.0016891161 - - -
4 Hb_005204_060 0.0029050967 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000905_020 0.0031692592 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
6 Hb_002289_030 0.0112411182 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]
7 Hb_009398_010 0.0125461381 - - Putative pectate lyase 2 [Glycine soja]
8 Hb_000383_030 0.0127276454 - - -
9 Hb_005389_180 0.014669099 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
10 Hb_009659_060 0.0424528634 - - cell wall invertase [Manihot esculenta]
11 Hb_002659_020 0.0444833543 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
12 Hb_000022_210 0.0477665494 - - PREDICTED: uncharacterized protein LOC105638395 [Jatropha curcas]
13 Hb_004162_310 0.0695121895 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_007320_050 0.0758412307 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
15 Hb_014749_010 0.083400465 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
16 Hb_005316_010 0.1049838652 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_000560_050 0.123125758 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
18 Hb_002671_070 0.1301316732 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
19 Hb_005946_130 0.1301316732 - - -
20 Hb_001048_120 0.1319575893 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004324_140 Hb_004324_140 Hb_184964_010 Hb_184964_010 Hb_004324_140--Hb_184964_010 Hb_002094_060 Hb_002094_060 Hb_004324_140--Hb_002094_060 Hb_005204_060 Hb_005204_060 Hb_004324_140--Hb_005204_060 Hb_000905_020 Hb_000905_020 Hb_004324_140--Hb_000905_020 Hb_002289_030 Hb_002289_030 Hb_004324_140--Hb_002289_030 Hb_009398_010 Hb_009398_010 Hb_004324_140--Hb_009398_010 Hb_184964_010--Hb_002094_060 Hb_184964_010--Hb_005204_060 Hb_184964_010--Hb_000905_020 Hb_184964_010--Hb_002289_030 Hb_184964_010--Hb_009398_010 Hb_002094_060--Hb_005204_060 Hb_002094_060--Hb_000905_020 Hb_002094_060--Hb_002289_030 Hb_002094_060--Hb_009398_010 Hb_005204_060--Hb_000905_020 Hb_005204_060--Hb_002289_030 Hb_005204_060--Hb_009398_010 Hb_000383_030 Hb_000383_030 Hb_000905_020--Hb_000383_030 Hb_005389_180 Hb_005389_180 Hb_000905_020--Hb_005389_180 Hb_002289_030--Hb_009398_010 Hb_002289_030--Hb_000905_020 Hb_009398_010--Hb_000905_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0187747 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0363973 0

CAGE analysis