Hb_000925_120

Information

Type -
Description -
Location Contig925: 103636-104853
Sequence    

Annotation

kegg
ID rcu:RCOM_0418900
description Spotted leaf protein, putative
nr
ID XP_002524055.1
description Spotted leaf protein, putative [Ricinus communis]
swissprot
ID C6L7U1
description Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2
trembl
ID B9SDI6
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_0418900 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase pub24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_120 0.0 - - Spotted leaf protein, putative [Ricinus communis]
2 Hb_116783_010 0.0625992903 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
3 Hb_000147_010 0.0735732391 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
4 Hb_055154_010 0.0782370582 - - PREDICTED: laccase-7 [Jatropha curcas]
5 Hb_003020_340 0.0949557541 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
6 Hb_000002_150 0.1060583339 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002809_020 0.1315775881 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
8 Hb_090510_010 0.140021177 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
9 Hb_160814_010 0.1447900016 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
10 Hb_001633_120 0.1464001191 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
11 Hb_001242_020 0.1500479944 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
12 Hb_178252_010 0.1535571146 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
13 Hb_000800_060 0.1551116951 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
14 Hb_001863_280 0.1568672598 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
15 Hb_000705_110 0.1635983497 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
16 Hb_003226_050 0.169512201 - - Pectinesterase-3 precursor, putative [Ricinus communis]
17 Hb_000364_130 0.1704921467 - - unnamed protein product [Vitis vinifera]
18 Hb_002437_010 0.1705282301 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
19 Hb_005396_010 0.1712509024 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
20 Hb_003480_010 0.1770203077 - - cytochrome P450 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000925_120 Hb_000925_120 Hb_116783_010 Hb_116783_010 Hb_000925_120--Hb_116783_010 Hb_000147_010 Hb_000147_010 Hb_000925_120--Hb_000147_010 Hb_055154_010 Hb_055154_010 Hb_000925_120--Hb_055154_010 Hb_003020_340 Hb_003020_340 Hb_000925_120--Hb_003020_340 Hb_000002_150 Hb_000002_150 Hb_000925_120--Hb_000002_150 Hb_002809_020 Hb_002809_020 Hb_000925_120--Hb_002809_020 Hb_116783_010--Hb_000147_010 Hb_116783_010--Hb_055154_010 Hb_090510_010 Hb_090510_010 Hb_116783_010--Hb_090510_010 Hb_116783_010--Hb_002809_020 Hb_001242_020 Hb_001242_020 Hb_116783_010--Hb_001242_020 Hb_160814_010 Hb_160814_010 Hb_000147_010--Hb_160814_010 Hb_000147_010--Hb_000002_150 Hb_000147_010--Hb_003020_340 Hb_000705_110 Hb_000705_110 Hb_000147_010--Hb_000705_110 Hb_055154_010--Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_055154_010--Hb_000800_060 Hb_069151_010 Hb_069151_010 Hb_055154_010--Hb_069151_010 Hb_055154_010--Hb_003020_340 Hb_003020_340--Hb_000002_150 Hb_005356_030 Hb_005356_030 Hb_003020_340--Hb_005356_030 Hb_003480_010 Hb_003480_010 Hb_003020_340--Hb_003480_010 Hb_000002_150--Hb_160814_010 Hb_000002_150--Hb_005356_030 Hb_103452_010 Hb_103452_010 Hb_000002_150--Hb_103452_010 Hb_007017_120 Hb_007017_120 Hb_002809_020--Hb_007017_120 Hb_178252_010 Hb_178252_010 Hb_002809_020--Hb_178252_010 Hb_098030_010 Hb_098030_010 Hb_002809_020--Hb_098030_010 Hb_002809_020--Hb_055154_010 Hb_003166_020 Hb_003166_020 Hb_002809_020--Hb_003166_020 Hb_008418_010 Hb_008418_010 Hb_002809_020--Hb_008418_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0542913 0.0983288 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.188332 0

CAGE analysis