Hb_000705_110

Information

Type -
Description -
Location Contig705: 92154-92393
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09220g
description hypothetical protein
nr
ID XP_006382942.1
description hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GEQ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s09220g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55067: 92121-92608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_110 0.0 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
2 Hb_001633_120 0.1114552379 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
3 Hb_160814_010 0.1122386331 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
4 Hb_000147_010 0.1136058445 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
5 Hb_004785_150 0.1254794086 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
6 Hb_000743_070 0.1332615024 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
7 Hb_014865_010 0.1356647355 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
8 Hb_000002_150 0.144099538 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002437_010 0.1447988007 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
10 Hb_000127_050 0.148512721 - - -
11 Hb_001242_020 0.1490264142 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
12 Hb_003177_100 0.1503589011 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
13 Hb_009780_110 0.1514371558 - - PREDICTED: protein RSI-1 [Cicer arietinum]
14 Hb_000925_120 0.1635983497 - - Spotted leaf protein, putative [Ricinus communis]
15 Hb_000329_570 0.1646452682 - - -
16 Hb_003226_050 0.1655723381 - - Pectinesterase-3 precursor, putative [Ricinus communis]
17 Hb_000853_010 0.1659871886 - - Pectinesterase-3 precursor, putative [Ricinus communis]
18 Hb_002580_020 0.1674787039 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
19 Hb_020112_010 0.1676044411 - - acyltransferase, putative [Ricinus communis]
20 Hb_006834_010 0.1718873695 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000705_110 Hb_000705_110 Hb_001633_120 Hb_001633_120 Hb_000705_110--Hb_001633_120 Hb_160814_010 Hb_160814_010 Hb_000705_110--Hb_160814_010 Hb_000147_010 Hb_000147_010 Hb_000705_110--Hb_000147_010 Hb_004785_150 Hb_004785_150 Hb_000705_110--Hb_004785_150 Hb_000743_070 Hb_000743_070 Hb_000705_110--Hb_000743_070 Hb_014865_010 Hb_014865_010 Hb_000705_110--Hb_014865_010 Hb_002437_010 Hb_002437_010 Hb_001633_120--Hb_002437_010 Hb_001242_020 Hb_001242_020 Hb_001633_120--Hb_001242_020 Hb_000161_230 Hb_000161_230 Hb_001633_120--Hb_000161_230 Hb_000187_110 Hb_000187_110 Hb_001633_120--Hb_000187_110 Hb_003226_050 Hb_003226_050 Hb_001633_120--Hb_003226_050 Hb_000002_150 Hb_000002_150 Hb_160814_010--Hb_000002_150 Hb_160814_010--Hb_000147_010 Hb_000127_050 Hb_000127_050 Hb_160814_010--Hb_000127_050 Hb_160814_010--Hb_000743_070 Hb_160814_010--Hb_004785_150 Hb_000925_120 Hb_000925_120 Hb_000147_010--Hb_000925_120 Hb_000147_010--Hb_000002_150 Hb_116783_010 Hb_116783_010 Hb_000147_010--Hb_116783_010 Hb_003020_340 Hb_003020_340 Hb_000147_010--Hb_003020_340 Hb_000329_570 Hb_000329_570 Hb_004785_150--Hb_000329_570 Hb_004785_150--Hb_000743_070 Hb_020112_010 Hb_020112_010 Hb_004785_150--Hb_020112_010 Hb_000496_080 Hb_000496_080 Hb_004785_150--Hb_000496_080 Hb_010308_010 Hb_010308_010 Hb_004785_150--Hb_010308_010 Hb_001300_060 Hb_001300_060 Hb_004785_150--Hb_001300_060 Hb_000743_070--Hb_000127_050 Hb_000743_070--Hb_020112_010 Hb_000743_070--Hb_000496_080 Hb_000743_070--Hb_010308_010 Hb_004330_050 Hb_004330_050 Hb_000743_070--Hb_004330_050 Hb_014865_010--Hb_001242_020 Hb_000676_130 Hb_000676_130 Hb_014865_010--Hb_000676_130 Hb_014865_010--Hb_002437_010 Hb_009780_110 Hb_009780_110 Hb_014865_010--Hb_009780_110 Hb_001596_030 Hb_001596_030 Hb_014865_010--Hb_001596_030 Hb_000993_020 Hb_000993_020 Hb_014865_010--Hb_000993_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.982822 1.07781 20.63 59.1945 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.569263 0 57.0136 0

CAGE analysis