Hb_001633_120

Information

Type -
Description -
Location Contig1633: 93644-94165
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08740g
description hypothetical protein
nr
ID XP_012067336.1
description PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FKZ0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08740g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14892: 94703-98439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_120 0.0 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
2 Hb_000705_110 0.1114552379 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
3 Hb_002437_010 0.1116227082 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
4 Hb_001242_020 0.121957226 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
5 Hb_000161_230 0.1228229645 - - lactoylglutathione lyase, putative [Ricinus communis]
6 Hb_000187_110 0.1311219625 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
7 Hb_003226_050 0.1356208308 - - Pectinesterase-3 precursor, putative [Ricinus communis]
8 Hb_014865_010 0.1367124012 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
9 Hb_000544_130 0.1433649683 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
10 Hb_000147_010 0.1447346516 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
11 Hb_000925_120 0.1464001191 - - Spotted leaf protein, putative [Ricinus communis]
12 Hb_000002_150 0.1523653065 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000979_080 0.1565534289 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
14 Hb_003020_340 0.1573589783 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
15 Hb_002809_020 0.1633991582 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
16 Hb_006834_010 0.1638701028 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000993_020 0.1662024375 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
18 Hb_098030_010 0.1692905156 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
19 Hb_160814_010 0.1694560115 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
20 Hb_116783_010 0.1712836176 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]

Gene co-expression network

sample Hb_001633_120 Hb_001633_120 Hb_000705_110 Hb_000705_110 Hb_001633_120--Hb_000705_110 Hb_002437_010 Hb_002437_010 Hb_001633_120--Hb_002437_010 Hb_001242_020 Hb_001242_020 Hb_001633_120--Hb_001242_020 Hb_000161_230 Hb_000161_230 Hb_001633_120--Hb_000161_230 Hb_000187_110 Hb_000187_110 Hb_001633_120--Hb_000187_110 Hb_003226_050 Hb_003226_050 Hb_001633_120--Hb_003226_050 Hb_160814_010 Hb_160814_010 Hb_000705_110--Hb_160814_010 Hb_000147_010 Hb_000147_010 Hb_000705_110--Hb_000147_010 Hb_004785_150 Hb_004785_150 Hb_000705_110--Hb_004785_150 Hb_000743_070 Hb_000743_070 Hb_000705_110--Hb_000743_070 Hb_014865_010 Hb_014865_010 Hb_000705_110--Hb_014865_010 Hb_002437_010--Hb_014865_010 Hb_002437_010--Hb_001242_020 Hb_000993_020 Hb_000993_020 Hb_002437_010--Hb_000993_020 Hb_000676_130 Hb_000676_130 Hb_002437_010--Hb_000676_130 Hb_000979_080 Hb_000979_080 Hb_002437_010--Hb_000979_080 Hb_001242_020--Hb_014865_010 Hb_000540_030 Hb_000540_030 Hb_001242_020--Hb_000540_030 Hb_001596_030 Hb_001596_030 Hb_001242_020--Hb_001596_030 Hb_009780_110 Hb_009780_110 Hb_001242_020--Hb_009780_110 Hb_000161_230--Hb_000187_110 Hb_000544_130 Hb_000544_130 Hb_000161_230--Hb_000544_130 Hb_000161_230--Hb_003226_050 Hb_001158_110 Hb_001158_110 Hb_000161_230--Hb_001158_110 Hb_003020_340 Hb_003020_340 Hb_000161_230--Hb_003020_340 Hb_000187_110--Hb_000979_080 Hb_001002_090 Hb_001002_090 Hb_000187_110--Hb_001002_090 Hb_000187_110--Hb_003226_050 Hb_055440_010 Hb_055440_010 Hb_000187_110--Hb_055440_010 Hb_000364_130 Hb_000364_130 Hb_003226_050--Hb_000364_130 Hb_003768_100 Hb_003768_100 Hb_003226_050--Hb_003768_100 Hb_003226_050--Hb_000544_130 Hb_003226_050--Hb_000979_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.310068 1.00142 6.84749 12.3771 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.193457 0 18.9615 0

CAGE analysis