Hb_003226_050

Information

Type -
Description -
Location Contig3226: 47094-50502
Sequence    

Annotation

kegg
ID rcu:RCOM_1179070
description Pectinesterase-3 precursor, putative (EC:3.1.1.11)
nr
ID XP_002523113.1
description Pectinesterase-3 precursor, putative [Ricinus communis]
swissprot
ID O81301
description Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1
trembl
ID B9SAU4
description Pectinesterase OS=Ricinus communis GN=RCOM_1179070 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34155: 47949-49792 , PASA_asmbl_34156: 50149-50372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_050 0.0 - - Pectinesterase-3 precursor, putative [Ricinus communis]
2 Hb_000364_130 0.0972150716 - - unnamed protein product [Vitis vinifera]
3 Hb_003768_100 0.1085713657 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
4 Hb_000544_130 0.1091670098 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_000979_080 0.1196036886 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
6 Hb_000187_110 0.1213895081 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
7 Hb_000161_230 0.1348306661 - - lactoylglutathione lyase, putative [Ricinus communis]
8 Hb_001633_120 0.1356208308 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
9 Hb_002809_020 0.1410930944 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
10 Hb_006277_030 0.1419962299 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007017_120 0.1442190146 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
12 Hb_098030_010 0.1444771862 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
13 Hb_002025_380 0.1481773405 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
14 Hb_005503_010 0.1487185707 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
15 Hb_002437_010 0.1502921389 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
16 Hb_178252_010 0.1521475465 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
17 Hb_002559_010 0.15223495 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
18 Hb_004984_020 0.1570051009 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
19 Hb_003160_050 0.1649953895 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_000705_110 0.1655723381 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]

Gene co-expression network

sample Hb_003226_050 Hb_003226_050 Hb_000364_130 Hb_000364_130 Hb_003226_050--Hb_000364_130 Hb_003768_100 Hb_003768_100 Hb_003226_050--Hb_003768_100 Hb_000544_130 Hb_000544_130 Hb_003226_050--Hb_000544_130 Hb_000979_080 Hb_000979_080 Hb_003226_050--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_003226_050--Hb_000187_110 Hb_000161_230 Hb_000161_230 Hb_003226_050--Hb_000161_230 Hb_002559_010 Hb_002559_010 Hb_000364_130--Hb_002559_010 Hb_005503_010 Hb_005503_010 Hb_000364_130--Hb_005503_010 Hb_178252_010 Hb_178252_010 Hb_000364_130--Hb_178252_010 Hb_007017_120 Hb_007017_120 Hb_000364_130--Hb_007017_120 Hb_006277_030 Hb_006277_030 Hb_000364_130--Hb_006277_030 Hb_008418_010 Hb_008418_010 Hb_003768_100--Hb_008418_010 Hb_000723_240 Hb_000723_240 Hb_003768_100--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_003768_100--Hb_003160_050 Hb_007313_010 Hb_007313_010 Hb_003768_100--Hb_007313_010 Hb_003768_100--Hb_007017_120 Hb_000544_130--Hb_000161_230 Hb_002217_040 Hb_002217_040 Hb_000544_130--Hb_002217_040 Hb_000544_130--Hb_000187_110 Hb_000544_130--Hb_000979_080 Hb_001252_070 Hb_001252_070 Hb_000544_130--Hb_001252_070 Hb_000979_080--Hb_000187_110 Hb_001002_090 Hb_001002_090 Hb_000979_080--Hb_001002_090 Hb_000979_080--Hb_003768_100 Hb_055440_010 Hb_055440_010 Hb_000979_080--Hb_055440_010 Hb_001053_110 Hb_001053_110 Hb_000979_080--Hb_001053_110 Hb_000187_110--Hb_000161_230 Hb_000187_110--Hb_001002_090 Hb_000187_110--Hb_055440_010 Hb_001633_120 Hb_001633_120 Hb_000187_110--Hb_001633_120 Hb_000161_230--Hb_001633_120 Hb_001158_110 Hb_001158_110 Hb_000161_230--Hb_001158_110 Hb_003020_340 Hb_003020_340 Hb_000161_230--Hb_003020_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0782073 0.290858 3.00545 5.30095 0.0277068 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.04971 0.488725

CAGE analysis