Hb_005503_010

Information

Type -
Description -
Location Contig5503: 4443-4919
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G108000g
description hypothetical protein
nr
ID XP_012073251.1
description PREDICTED: probable protein Pop3 [Jatropha curcas]
swissprot
ID Q9LUV2
description Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1
trembl
ID A0A067KZ68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06195 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable protein pop3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48240: 4515-4999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005503_010 0.0 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
2 Hb_000364_130 0.1235458227 - - unnamed protein product [Vitis vinifera]
3 Hb_007017_120 0.1424581891 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
4 Hb_003768_100 0.1459149454 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
5 Hb_001360_060 0.1485658046 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
6 Hb_003226_050 0.1487185707 - - Pectinesterase-3 precursor, putative [Ricinus communis]
7 Hb_001863_280 0.1514227843 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
8 Hb_003789_020 0.1699869129 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
9 Hb_003097_200 0.1711501528 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000139_500 0.1714802252 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
11 Hb_000318_060 0.173126926 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002809_020 0.1777100569 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
13 Hb_006277_030 0.1785973791 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008066_060 0.179839052 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
15 Hb_008418_010 0.1803067897 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
16 Hb_003160_050 0.1803610783 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_010334_050 0.1805204527 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003177_080 0.1806362837 - - hypothetical protein L484_016032 [Morus notabilis]
19 Hb_030394_050 0.1833780029 - - lipid binding protein, putative [Ricinus communis]
20 Hb_008727_030 0.1848848563 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005503_010 Hb_005503_010 Hb_000364_130 Hb_000364_130 Hb_005503_010--Hb_000364_130 Hb_007017_120 Hb_007017_120 Hb_005503_010--Hb_007017_120 Hb_003768_100 Hb_003768_100 Hb_005503_010--Hb_003768_100 Hb_001360_060 Hb_001360_060 Hb_005503_010--Hb_001360_060 Hb_003226_050 Hb_003226_050 Hb_005503_010--Hb_003226_050 Hb_001863_280 Hb_001863_280 Hb_005503_010--Hb_001863_280 Hb_002559_010 Hb_002559_010 Hb_000364_130--Hb_002559_010 Hb_000364_130--Hb_003226_050 Hb_178252_010 Hb_178252_010 Hb_000364_130--Hb_178252_010 Hb_000364_130--Hb_007017_120 Hb_006277_030 Hb_006277_030 Hb_000364_130--Hb_006277_030 Hb_008418_010 Hb_008418_010 Hb_007017_120--Hb_008418_010 Hb_002809_020 Hb_002809_020 Hb_007017_120--Hb_002809_020 Hb_007017_120--Hb_178252_010 Hb_007017_120--Hb_003768_100 Hb_000723_240 Hb_000723_240 Hb_007017_120--Hb_000723_240 Hb_003166_020 Hb_003166_020 Hb_007017_120--Hb_003166_020 Hb_003768_100--Hb_008418_010 Hb_003768_100--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_003768_100--Hb_003160_050 Hb_007313_010 Hb_007313_010 Hb_003768_100--Hb_007313_010 Hb_003768_100--Hb_003226_050 Hb_003177_080 Hb_003177_080 Hb_001360_060--Hb_003177_080 Hb_003789_020 Hb_003789_020 Hb_001360_060--Hb_003789_020 Hb_003097_200 Hb_003097_200 Hb_001360_060--Hb_003097_200 Hb_156499_010 Hb_156499_010 Hb_001360_060--Hb_156499_010 Hb_000797_030 Hb_000797_030 Hb_001360_060--Hb_000797_030 Hb_011139_010 Hb_011139_010 Hb_001360_060--Hb_011139_010 Hb_000544_130 Hb_000544_130 Hb_003226_050--Hb_000544_130 Hb_000979_080 Hb_000979_080 Hb_003226_050--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_003226_050--Hb_000187_110 Hb_000161_230 Hb_000161_230 Hb_003226_050--Hb_000161_230 Hb_116783_010 Hb_116783_010 Hb_001863_280--Hb_116783_010 Hb_001863_280--Hb_002809_020 Hb_000925_120 Hb_000925_120 Hb_001863_280--Hb_000925_120 Hb_012368_080 Hb_012368_080 Hb_001863_280--Hb_012368_080 Hb_098030_010 Hb_098030_010 Hb_001863_280--Hb_098030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.528309 1.38535 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.33874 0.30004

CAGE analysis