Hb_002217_040

Information

Type -
Description -
Location Contig2217: 30766-35999
Sequence    

Annotation

kegg
ID rcu:RCOM_1002720
description Boron transporter, putative
nr
ID XP_012084153.1
description PREDICTED: boron transporter 1-like [Jatropha curcas]
swissprot
ID Q9M1P7
description Probable boron transporter 2 OS=Arabidopsis thaliana GN=BOR2 PE=2 SV=1
trembl
ID A0A067JVH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19061 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable boron transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22868: 31736-33234 , PASA_asmbl_22869: 34716-35716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_040 0.0 - - PREDICTED: boron transporter 1-like [Jatropha curcas]
2 Hb_000544_130 0.1255278826 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
3 Hb_001252_070 0.1277413033 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
4 Hb_005839_030 0.1586896792 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
5 Hb_055440_010 0.15922098 - - protein binding protein, putative [Ricinus communis]
6 Hb_003674_020 0.165314922 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
7 Hb_002592_050 0.1723410947 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
8 Hb_004984_020 0.1740883761 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
9 Hb_004846_080 0.1759086806 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
10 Hb_005144_080 0.1784638141 - - Serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000696_030 0.1831325138 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
12 Hb_032208_050 0.1864741972 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
13 Hb_000979_080 0.188272867 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
14 Hb_007044_220 0.1893126926 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
15 Hb_000161_230 0.1912605409 - - lactoylglutathione lyase, putative [Ricinus communis]
16 Hb_009070_030 0.1932885955 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
17 Hb_001002_090 0.194490119 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
18 Hb_010598_010 0.1946924761 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
19 Hb_000187_110 0.1966717475 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
20 Hb_004525_110 0.2010666819 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]

Gene co-expression network

sample Hb_002217_040 Hb_002217_040 Hb_000544_130 Hb_000544_130 Hb_002217_040--Hb_000544_130 Hb_001252_070 Hb_001252_070 Hb_002217_040--Hb_001252_070 Hb_005839_030 Hb_005839_030 Hb_002217_040--Hb_005839_030 Hb_055440_010 Hb_055440_010 Hb_002217_040--Hb_055440_010 Hb_003674_020 Hb_003674_020 Hb_002217_040--Hb_003674_020 Hb_002592_050 Hb_002592_050 Hb_002217_040--Hb_002592_050 Hb_003226_050 Hb_003226_050 Hb_000544_130--Hb_003226_050 Hb_000161_230 Hb_000161_230 Hb_000544_130--Hb_000161_230 Hb_000187_110 Hb_000187_110 Hb_000544_130--Hb_000187_110 Hb_000979_080 Hb_000979_080 Hb_000544_130--Hb_000979_080 Hb_000544_130--Hb_001252_070 Hb_005144_080 Hb_005144_080 Hb_001252_070--Hb_005144_080 Hb_000696_030 Hb_000696_030 Hb_001252_070--Hb_000696_030 Hb_001252_070--Hb_005839_030 Hb_001157_190 Hb_001157_190 Hb_001252_070--Hb_001157_190 Hb_005839_030--Hb_002592_050 Hb_005839_030--Hb_000696_030 Hb_005839_030--Hb_001157_190 Hb_005839_030--Hb_005144_080 Hb_011129_020 Hb_011129_020 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100 Hb_001002_090 Hb_001002_090 Hb_055440_010--Hb_001002_090 Hb_072997_010 Hb_072997_010 Hb_055440_010--Hb_072997_010 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_004096_010 Hb_004096_010 Hb_055440_010--Hb_004096_010 Hb_055440_010--Hb_000979_080 Hb_007590_110 Hb_007590_110 Hb_003674_020--Hb_007590_110 Hb_129996_010 Hb_129996_010 Hb_003674_020--Hb_129996_010 Hb_004846_080 Hb_004846_080 Hb_003674_020--Hb_004846_080 Hb_001476_130 Hb_001476_130 Hb_003674_020--Hb_001476_130 Hb_003674_020--Hb_000696_030 Hb_001782_100 Hb_001782_100 Hb_003674_020--Hb_001782_100 Hb_003050_100 Hb_003050_100 Hb_002592_050--Hb_003050_100 Hb_032208_050 Hb_032208_050 Hb_002592_050--Hb_032208_050 Hb_155444_010 Hb_155444_010 Hb_002592_050--Hb_155444_010 Hb_002025_050 Hb_002025_050 Hb_002592_050--Hb_002025_050 Hb_001178_090 Hb_001178_090 Hb_002592_050--Hb_001178_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.145366 0.607683 2.68025 3.5369 0.372608 0.131647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117118 0.0394973 0.0251243 3.97722 0.224131

CAGE analysis