Hb_001242_020

Information

Type -
Description -
Location Contig1242: 33152-35588
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06570g
description POPTRDRAFT_411712; hypothetical protein
nr
ID KDP36567.1
description hypothetical protein JCGZ_08334 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067KKA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08334 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07334: 31527-34297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_020 0.0 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
2 Hb_014865_010 0.0763964115 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
3 Hb_002437_010 0.1012539257 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
4 Hb_000540_030 0.1062950493 - - Chitinase 1 precursor, putative [Ricinus communis]
5 Hb_001596_030 0.1085042852 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
6 Hb_001633_120 0.121957226 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
7 Hb_009780_110 0.1256746411 - - PREDICTED: protein RSI-1 [Cicer arietinum]
8 Hb_116783_010 0.1399174372 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
9 Hb_098030_010 0.1431728748 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
10 Hb_000147_010 0.1437726845 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
11 Hb_000993_020 0.1475283181 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
12 Hb_000705_110 0.1490264142 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
13 Hb_000925_120 0.1500479944 - - Spotted leaf protein, putative [Ricinus communis]
14 Hb_000676_130 0.1533177107 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
15 Hb_081282_010 0.1566777133 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
16 Hb_003768_100 0.1585495846 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
17 Hb_000417_350 0.1586204729 - - conserved hypothetical protein [Ricinus communis]
18 Hb_129637_010 0.1609264822 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
19 Hb_002809_020 0.1617985637 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
20 Hb_009711_040 0.1641958835 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]

Gene co-expression network

sample Hb_001242_020 Hb_001242_020 Hb_014865_010 Hb_014865_010 Hb_001242_020--Hb_014865_010 Hb_002437_010 Hb_002437_010 Hb_001242_020--Hb_002437_010 Hb_000540_030 Hb_000540_030 Hb_001242_020--Hb_000540_030 Hb_001596_030 Hb_001596_030 Hb_001242_020--Hb_001596_030 Hb_001633_120 Hb_001633_120 Hb_001242_020--Hb_001633_120 Hb_009780_110 Hb_009780_110 Hb_001242_020--Hb_009780_110 Hb_000676_130 Hb_000676_130 Hb_014865_010--Hb_000676_130 Hb_014865_010--Hb_002437_010 Hb_014865_010--Hb_009780_110 Hb_014865_010--Hb_001596_030 Hb_000993_020 Hb_000993_020 Hb_014865_010--Hb_000993_020 Hb_002437_010--Hb_001633_120 Hb_002437_010--Hb_000993_020 Hb_002437_010--Hb_000676_130 Hb_000979_080 Hb_000979_080 Hb_002437_010--Hb_000979_080 Hb_002301_420 Hb_002301_420 Hb_000540_030--Hb_002301_420 Hb_000540_030--Hb_001596_030 Hb_098030_010 Hb_098030_010 Hb_000540_030--Hb_098030_010 Hb_021418_010 Hb_021418_010 Hb_000540_030--Hb_021418_010 Hb_012368_080 Hb_012368_080 Hb_000540_030--Hb_012368_080 Hb_081282_010 Hb_081282_010 Hb_001596_030--Hb_081282_010 Hb_000306_050 Hb_000306_050 Hb_001596_030--Hb_000306_050 Hb_001596_030--Hb_021418_010 Hb_020805_110 Hb_020805_110 Hb_001596_030--Hb_020805_110 Hb_000705_110 Hb_000705_110 Hb_001633_120--Hb_000705_110 Hb_000161_230 Hb_000161_230 Hb_001633_120--Hb_000161_230 Hb_000187_110 Hb_000187_110 Hb_001633_120--Hb_000187_110 Hb_003226_050 Hb_003226_050 Hb_001633_120--Hb_003226_050 Hb_009780_110--Hb_000676_130 Hb_161346_010 Hb_161346_010 Hb_009780_110--Hb_161346_010 Hb_003090_230 Hb_003090_230 Hb_009780_110--Hb_003090_230 Hb_009780_110--Hb_002437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0444992 0.144163 0.496415 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.750545 0

CAGE analysis