Hb_009780_110

Information

Type -
Description -
Location Contig9780: 116255-116746
Sequence    

Annotation

kegg
ID cam:101498465
description protein RSI-1-like
nr
ID XP_004490815.1
description PREDICTED: protein RSI-1 [Cicer arietinum]
swissprot
ID P47926
description Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1
trembl
ID I3SUJ7
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005576
description protein rsi-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64256: 116157-116867 , PASA_asmbl_64257: 116204-116883
cDNA
(Sanger)
(ID:Location)		 008_H03.ab1: 116159-116867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_110 0.0 - - PREDICTED: protein RSI-1 [Cicer arietinum]
2 Hb_014865_010 0.1225167235 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
3 Hb_001242_020 0.1256746411 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
4 Hb_000676_130 0.1399200023 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
5 Hb_161346_010 0.1399328323 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
6 Hb_003090_230 0.1438442046 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002437_010 0.1463694541 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
8 Hb_001596_030 0.1503536085 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
9 Hb_000705_110 0.1514371558 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
10 Hb_009711_040 0.1522550781 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_003177_100 0.1540715105 - - PREDICTED: auxin-induced protein 6B [Jatropha curcas]
12 Hb_000417_350 0.1542829389 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002580_020 0.1622421216 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
14 Hb_129637_010 0.1623695169 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
15 Hb_003171_070 0.1662426483 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
16 Hb_005144_180 0.1687917263 - - PREDICTED: protein enabled homolog [Populus euphratica]
17 Hb_020805_110 0.1696560874 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
18 Hb_000676_380 0.170109117 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_003789_020 0.1709925455 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
20 Hb_001633_120 0.1739032989 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]

Gene co-expression network

sample Hb_009780_110 Hb_009780_110 Hb_014865_010 Hb_014865_010 Hb_009780_110--Hb_014865_010 Hb_001242_020 Hb_001242_020 Hb_009780_110--Hb_001242_020 Hb_000676_130 Hb_000676_130 Hb_009780_110--Hb_000676_130 Hb_161346_010 Hb_161346_010 Hb_009780_110--Hb_161346_010 Hb_003090_230 Hb_003090_230 Hb_009780_110--Hb_003090_230 Hb_002437_010 Hb_002437_010 Hb_009780_110--Hb_002437_010 Hb_014865_010--Hb_001242_020 Hb_014865_010--Hb_000676_130 Hb_014865_010--Hb_002437_010 Hb_001596_030 Hb_001596_030 Hb_014865_010--Hb_001596_030 Hb_000993_020 Hb_000993_020 Hb_014865_010--Hb_000993_020 Hb_001242_020--Hb_002437_010 Hb_000540_030 Hb_000540_030 Hb_001242_020--Hb_000540_030 Hb_001242_020--Hb_001596_030 Hb_001633_120 Hb_001633_120 Hb_001242_020--Hb_001633_120 Hb_000956_060 Hb_000956_060 Hb_000676_130--Hb_000956_060 Hb_003811_050 Hb_003811_050 Hb_000676_130--Hb_003811_050 Hb_002580_020 Hb_002580_020 Hb_000676_130--Hb_002580_020 Hb_000975_130 Hb_000975_130 Hb_000676_130--Hb_000975_130 Hb_005672_030 Hb_005672_030 Hb_000676_130--Hb_005672_030 Hb_182831_020 Hb_182831_020 Hb_161346_010--Hb_182831_020 Hb_003171_070 Hb_003171_070 Hb_161346_010--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_161346_010--Hb_131029_010 Hb_000676_380 Hb_000676_380 Hb_161346_010--Hb_000676_380 Hb_002413_030 Hb_002413_030 Hb_161346_010--Hb_002413_030 Hb_003789_020 Hb_003789_020 Hb_161346_010--Hb_003789_020 Hb_003090_230--Hb_000676_380 Hb_020805_110 Hb_020805_110 Hb_003090_230--Hb_020805_110 Hb_009711_040 Hb_009711_040 Hb_003090_230--Hb_009711_040 Hb_021418_010 Hb_021418_010 Hb_003090_230--Hb_021418_010 Hb_004875_040 Hb_004875_040 Hb_003090_230--Hb_004875_040 Hb_003090_230--Hb_001596_030 Hb_002437_010--Hb_001633_120 Hb_002437_010--Hb_000993_020 Hb_002437_010--Hb_000676_130 Hb_000979_080 Hb_000979_080 Hb_002437_010--Hb_000979_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.688663 5.82256 20.5919 104.634 0.890457 1.521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28295 0 0 114.744 1.00962

CAGE analysis