Hb_000540_030

Information

Type -
Description -
Location Contig540: 32658-33575
Sequence    

Annotation

kegg
ID rcu:RCOM_1264000
description Chitinase 1 precursor, putative (EC:3.2.1.14)
nr
ID XP_002532811.1
description Chitinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q7M443
description Chitinase 2 OS=Tulipa bakeri PE=1 SV=1
trembl
ID B9T3J2
description Chitinase 1, putative OS=Ricinus communis GN=RCOM_1264000 PE=3 SV=1
Gene Ontology
ID GO:0004568
description chitinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_030 0.0 - - Chitinase 1 precursor, putative [Ricinus communis]
2 Hb_001242_020 0.1062950493 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
3 Hb_002301_420 0.1069948634 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
4 Hb_001596_030 0.1114499847 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
5 Hb_098030_010 0.1246659241 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
6 Hb_021418_010 0.125505339 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
7 Hb_012368_080 0.1318737082 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
8 Hb_081282_010 0.1368350171 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
9 Hb_018591_010 0.1499295656 - - kinase, putative [Ricinus communis]
10 Hb_116783_010 0.1509969285 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
11 Hb_001189_030 0.1533927355 - - hypothetical protein RCOM_1341480 [Ricinus communis]
12 Hb_000347_530 0.1555494745 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
13 Hb_004324_200 0.1571256274 - - PREDICTED: transcription factor TRY-like [Populus euphratica]
14 Hb_003064_010 0.1576189629 - - Senescence-related gene 1 [Theobroma cacao]
15 Hb_005144_180 0.1582501433 - - PREDICTED: protein enabled homolog [Populus euphratica]
16 Hb_000380_210 0.1597711017 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
17 Hb_000513_100 0.1606012324 - - germin-like protein GLP, partial [Manihot esculenta]
18 Hb_006538_070 0.161942614 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
19 Hb_002809_020 0.1625112613 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
20 Hb_012779_010 0.1625873605 - - hypothetical protein JCGZ_05865 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_030 Hb_000540_030 Hb_001242_020 Hb_001242_020 Hb_000540_030--Hb_001242_020 Hb_002301_420 Hb_002301_420 Hb_000540_030--Hb_002301_420 Hb_001596_030 Hb_001596_030 Hb_000540_030--Hb_001596_030 Hb_098030_010 Hb_098030_010 Hb_000540_030--Hb_098030_010 Hb_021418_010 Hb_021418_010 Hb_000540_030--Hb_021418_010 Hb_012368_080 Hb_012368_080 Hb_000540_030--Hb_012368_080 Hb_014865_010 Hb_014865_010 Hb_001242_020--Hb_014865_010 Hb_002437_010 Hb_002437_010 Hb_001242_020--Hb_002437_010 Hb_001242_020--Hb_001596_030 Hb_001633_120 Hb_001633_120 Hb_001242_020--Hb_001633_120 Hb_009780_110 Hb_009780_110 Hb_001242_020--Hb_009780_110 Hb_018591_010 Hb_018591_010 Hb_002301_420--Hb_018591_010 Hb_164283_010 Hb_164283_010 Hb_002301_420--Hb_164283_010 Hb_002301_420--Hb_012368_080 Hb_006637_040 Hb_006637_040 Hb_002301_420--Hb_006637_040 Hb_018133_110 Hb_018133_110 Hb_002301_420--Hb_018133_110 Hb_081282_010 Hb_081282_010 Hb_001596_030--Hb_081282_010 Hb_000306_050 Hb_000306_050 Hb_001596_030--Hb_000306_050 Hb_001596_030--Hb_021418_010 Hb_020805_110 Hb_020805_110 Hb_001596_030--Hb_020805_110 Hb_098030_010--Hb_012368_080 Hb_002809_020 Hb_002809_020 Hb_098030_010--Hb_002809_020 Hb_008418_010 Hb_008418_010 Hb_098030_010--Hb_008418_010 Hb_098030_010--Hb_006637_040 Hb_098030_010--Hb_018591_010 Hb_003768_100 Hb_003768_100 Hb_098030_010--Hb_003768_100 Hb_000077_450 Hb_000077_450 Hb_021418_010--Hb_000077_450 Hb_021418_010--Hb_081282_010 Hb_011452_020 Hb_011452_020 Hb_021418_010--Hb_011452_020 Hb_007181_080 Hb_007181_080 Hb_021418_010--Hb_007181_080 Hb_003090_230 Hb_003090_230 Hb_021418_010--Hb_003090_230 Hb_003893_100 Hb_003893_100 Hb_012368_080--Hb_003893_100 Hb_000297_180 Hb_000297_180 Hb_012368_080--Hb_000297_180 Hb_012368_080--Hb_006637_040 Hb_012368_080--Hb_018591_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0205481 0.0369225 0.166376 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.393566 0

CAGE analysis