Hb_002437_010

Information

Type -
Description -
Location Contig2437: 8509-8979
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14930g
description POPTRDRAFT_729216; hypothetical protein
nr
ID XP_011021006.1
description PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I6L4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14930g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002437_010 0.0 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
2 Hb_014865_010 0.0912377823 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
3 Hb_001242_020 0.1012539257 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
4 Hb_001633_120 0.1116227082 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
5 Hb_000993_020 0.1300156652 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
6 Hb_000676_130 0.1303532062 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
7 Hb_000979_080 0.1333815798 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
8 Hb_006834_010 0.1399222745 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000187_110 0.1425736143 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
10 Hb_000705_110 0.1447988007 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
11 Hb_009780_110 0.1463694541 - - PREDICTED: protein RSI-1 [Cicer arietinum]
12 Hb_000853_010 0.1469168799 - - Pectinesterase-3 precursor, putative [Ricinus communis]
13 Hb_003226_050 0.1502921389 - - Pectinesterase-3 precursor, putative [Ricinus communis]
14 Hb_000544_130 0.150798097 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_000147_010 0.1539383893 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
16 Hb_000161_230 0.1548209465 - - lactoylglutathione lyase, putative [Ricinus communis]
17 Hb_001416_170 0.1624436854 - - kinase, putative [Ricinus communis]
18 Hb_003768_110 0.1660086616 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
19 Hb_002580_020 0.1675793393 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
20 Hb_004984_020 0.1680150462 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]

Gene co-expression network

sample Hb_002437_010 Hb_002437_010 Hb_014865_010 Hb_014865_010 Hb_002437_010--Hb_014865_010 Hb_001242_020 Hb_001242_020 Hb_002437_010--Hb_001242_020 Hb_001633_120 Hb_001633_120 Hb_002437_010--Hb_001633_120 Hb_000993_020 Hb_000993_020 Hb_002437_010--Hb_000993_020 Hb_000676_130 Hb_000676_130 Hb_002437_010--Hb_000676_130 Hb_000979_080 Hb_000979_080 Hb_002437_010--Hb_000979_080 Hb_014865_010--Hb_001242_020 Hb_014865_010--Hb_000676_130 Hb_009780_110 Hb_009780_110 Hb_014865_010--Hb_009780_110 Hb_001596_030 Hb_001596_030 Hb_014865_010--Hb_001596_030 Hb_014865_010--Hb_000993_020 Hb_000540_030 Hb_000540_030 Hb_001242_020--Hb_000540_030 Hb_001242_020--Hb_001596_030 Hb_001242_020--Hb_001633_120 Hb_001242_020--Hb_009780_110 Hb_000705_110 Hb_000705_110 Hb_001633_120--Hb_000705_110 Hb_000161_230 Hb_000161_230 Hb_001633_120--Hb_000161_230 Hb_000187_110 Hb_000187_110 Hb_001633_120--Hb_000187_110 Hb_003226_050 Hb_003226_050 Hb_001633_120--Hb_003226_050 Hb_003768_110 Hb_003768_110 Hb_000993_020--Hb_003768_110 Hb_001623_400 Hb_001623_400 Hb_000993_020--Hb_001623_400 Hb_000993_020--Hb_000979_080 Hb_000417_350 Hb_000417_350 Hb_000993_020--Hb_000417_350 Hb_000956_060 Hb_000956_060 Hb_000676_130--Hb_000956_060 Hb_003811_050 Hb_003811_050 Hb_000676_130--Hb_003811_050 Hb_002580_020 Hb_002580_020 Hb_000676_130--Hb_002580_020 Hb_000975_130 Hb_000975_130 Hb_000676_130--Hb_000975_130 Hb_005672_030 Hb_005672_030 Hb_000676_130--Hb_005672_030 Hb_000979_080--Hb_000187_110 Hb_001002_090 Hb_001002_090 Hb_000979_080--Hb_001002_090 Hb_003768_100 Hb_003768_100 Hb_000979_080--Hb_003768_100 Hb_000979_080--Hb_003226_050 Hb_055440_010 Hb_055440_010 Hb_000979_080--Hb_055440_010 Hb_001053_110 Hb_001053_110 Hb_000979_080--Hb_001053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.317813 1.26145 2.83267 0.0594427 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.65496 0

CAGE analysis