Hb_026650_010

Information

Type -
Description -
Location Contig26650: 5899-10188
Sequence    

Annotation

kegg
ID rcu:RCOM_1631200
description nitrate transporter, putative
nr
ID XP_002517267.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9SX20
description Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana GN=NPF3.1 PE=2 SV=1
trembl
ID B9RU48
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1631200 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026650_010 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_032621_010 0.0372330703 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
3 Hb_003392_030 0.0907896233 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003166_020 0.0930507453 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
5 Hb_000800_060 0.1321435818 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
6 Hb_000668_070 0.1324905053 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000917_330 0.1350132585 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
8 Hb_069151_010 0.1361670946 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
9 Hb_090510_010 0.1364995526 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
10 Hb_005396_010 0.1400456235 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
11 Hb_001936_030 0.142444448 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
12 Hb_124625_010 0.1434830113 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
13 Hb_000625_130 0.1510371839 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
14 Hb_050898_020 0.1531718963 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
15 Hb_002218_040 0.1565391054 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002809_020 0.1584044666 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
17 Hb_178252_010 0.1630460482 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
18 Hb_007017_120 0.1648928715 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
19 Hb_035583_010 0.1675719054 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
20 Hb_055154_010 0.1690707901 - - PREDICTED: laccase-7 [Jatropha curcas]

Gene co-expression network

sample Hb_026650_010 Hb_026650_010 Hb_032621_010 Hb_032621_010 Hb_026650_010--Hb_032621_010 Hb_003392_030 Hb_003392_030 Hb_026650_010--Hb_003392_030 Hb_003166_020 Hb_003166_020 Hb_026650_010--Hb_003166_020 Hb_000800_060 Hb_000800_060 Hb_026650_010--Hb_000800_060 Hb_000668_070 Hb_000668_070 Hb_026650_010--Hb_000668_070 Hb_000917_330 Hb_000917_330 Hb_026650_010--Hb_000917_330 Hb_032621_010--Hb_003166_020 Hb_069151_010 Hb_069151_010 Hb_032621_010--Hb_069151_010 Hb_032621_010--Hb_000800_060 Hb_032621_010--Hb_003392_030 Hb_090510_010 Hb_090510_010 Hb_032621_010--Hb_090510_010 Hb_035583_010 Hb_035583_010 Hb_003392_030--Hb_035583_010 Hb_001936_030 Hb_001936_030 Hb_003392_030--Hb_001936_030 Hb_003392_030--Hb_003166_020 Hb_050898_020 Hb_050898_020 Hb_003392_030--Hb_050898_020 Hb_003166_020--Hb_000917_330 Hb_003166_020--Hb_000800_060 Hb_003166_020--Hb_000668_070 Hb_003166_020--Hb_069151_010 Hb_000800_060--Hb_090510_010 Hb_005396_010 Hb_005396_010 Hb_000800_060--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_000800_060--Hb_124625_010 Hb_000800_060--Hb_000668_070 Hb_000800_060--Hb_069151_010 Hb_000800_060--Hb_050898_020 Hb_000668_070--Hb_069151_010 Hb_000668_070--Hb_050898_020 Hb_000668_070--Hb_124625_010 Hb_000668_070--Hb_005396_010 Hb_000668_070--Hb_090510_010 Hb_000625_130 Hb_000625_130 Hb_000917_330--Hb_000625_130 Hb_000917_330--Hb_001936_030 Hb_001691_060 Hb_001691_060 Hb_000917_330--Hb_001691_060 Hb_000075_030 Hb_000075_030 Hb_000917_330--Hb_000075_030 Hb_025469_040 Hb_025469_040 Hb_000917_330--Hb_025469_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.374224 0.289586 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0363692 1.69084 0.0405245

CAGE analysis