Hb_006618_080

Information

Type -
Description -
Location Contig6618: 69102-71495
Sequence    

Annotation

kegg
ID rcu:RCOM_1679880
description lipid binding protein, putative
nr
ID XP_012087118.1
description PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
swissprot
ID Q9FFY3
description Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1
trembl
ID A0A067K1E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53063: 69056-71430
cDNA
(Sanger)
(ID:Location)		 007_M17.ab1: 69062-71429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_080 0.0 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
2 Hb_000347_230 0.0980583886 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
3 Hb_000005_230 0.1169551954 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
4 Hb_007313_010 0.1186447742 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
5 Hb_000723_240 0.1268049239 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
6 Hb_000589_100 0.1295596657 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_003734_120 0.1313519363 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
8 Hb_006788_010 0.1315331757 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
9 Hb_111147_010 0.1339001574 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003768_100 0.134203276 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
11 Hb_018133_110 0.1391249516 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_008418_010 0.1397630435 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
13 Hb_050203_010 0.1454610576 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_001623_400 0.1458518697 - - conserved hypothetical protein [Ricinus communis]
15 Hb_164283_010 0.1459569111 - - hypothetical protein RCOM_0725500 [Ricinus communis]
16 Hb_002597_010 0.1476867493 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
17 Hb_000834_210 0.1479510212 - - unnamed protein product [Vitis vinifera]
18 Hb_008066_060 0.1484120689 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
19 Hb_000276_030 0.1511697964 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_006637_040 0.1514713146 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]

Gene co-expression network

sample Hb_006618_080 Hb_006618_080 Hb_000347_230 Hb_000347_230 Hb_006618_080--Hb_000347_230 Hb_000005_230 Hb_000005_230 Hb_006618_080--Hb_000005_230 Hb_007313_010 Hb_007313_010 Hb_006618_080--Hb_007313_010 Hb_000723_240 Hb_000723_240 Hb_006618_080--Hb_000723_240 Hb_000589_100 Hb_000589_100 Hb_006618_080--Hb_000589_100 Hb_003734_120 Hb_003734_120 Hb_006618_080--Hb_003734_120 Hb_018133_110 Hb_018133_110 Hb_000347_230--Hb_018133_110 Hb_001623_400 Hb_001623_400 Hb_000347_230--Hb_001623_400 Hb_000032_560 Hb_000032_560 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_000347_230--Hb_003734_120 Hb_006788_010 Hb_006788_010 Hb_000005_230--Hb_006788_010 Hb_002597_010 Hb_002597_010 Hb_000005_230--Hb_002597_010 Hb_000005_230--Hb_000032_560 Hb_000005_230--Hb_007313_010 Hb_000005_230--Hb_000347_230 Hb_000834_210 Hb_000834_210 Hb_007313_010--Hb_000834_210 Hb_007313_010--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_007313_010--Hb_003160_050 Hb_003768_100 Hb_003768_100 Hb_007313_010--Hb_003768_100 Hb_001514_070 Hb_001514_070 Hb_007313_010--Hb_001514_070 Hb_007313_010--Hb_003734_120 Hb_000723_240--Hb_003160_050 Hb_000723_240--Hb_000834_210 Hb_008418_010 Hb_008418_010 Hb_000723_240--Hb_008418_010 Hb_001922_010 Hb_001922_010 Hb_000723_240--Hb_001922_010 Hb_000723_240--Hb_000589_100 Hb_000005_350 Hb_000005_350 Hb_000589_100--Hb_000005_350 Hb_011861_020 Hb_011861_020 Hb_000589_100--Hb_011861_020 Hb_028927_010 Hb_028927_010 Hb_000589_100--Hb_028927_010 Hb_000025_740 Hb_000025_740 Hb_000589_100--Hb_000025_740 Hb_001691_060 Hb_001691_060 Hb_000589_100--Hb_001691_060 Hb_000276_030 Hb_000276_030 Hb_003734_120--Hb_000276_030 Hb_003787_060 Hb_003787_060 Hb_003734_120--Hb_003787_060 Hb_188923_010 Hb_188923_010 Hb_003734_120--Hb_188923_010 Hb_003734_120--Hb_018133_110 Hb_002042_200 Hb_002042_200 Hb_003734_120--Hb_002042_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0904963 9.17631 13.64 26.0926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0694444 0.0546024 2.26715 66.53 4.04664

CAGE analysis