Hb_064122_010

Information

Type -
Description -
Location Contig64122: 2503-7828
Sequence    

Annotation

kegg
ID rcu:RCOM_0679090
description inosine-uridine preferring nucleoside hydrolase, putative
nr
ID XP_012069449.1
description PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52182: 2437-2671 , PASA_asmbl_52183: 4001-5436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064122_010 0.0 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
2 Hb_001369_140 0.151709016 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009711_040 0.1836048301 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
4 Hb_000676_380 0.1888076599 - - cytochrome P450 family protein [Populus trichocarpa]
5 Hb_003090_230 0.1894751444 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009732_040 0.1905912502 - - hypothetical protein POPTR_0006s04880g [Populus trichocarpa]
7 Hb_142382_010 0.1919448245 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
8 Hb_000011_380 0.1964152525 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
9 Hb_000749_160 0.1972669638 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_001195_750 0.1974502844 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
11 Hb_000380_210 0.1987443359 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
12 Hb_009780_110 0.1998393063 - - PREDICTED: protein RSI-1 [Cicer arietinum]
13 Hb_005152_010 0.1999418802 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
14 Hb_003171_070 0.2044764914 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
15 Hb_032225_030 0.2046551175 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
16 Hb_161346_010 0.2100720099 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
17 Hb_182831_020 0.2105679111 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_002597_010 0.2119162381 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
19 Hb_008727_030 0.2125384845 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011139_010 0.213705354 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_064122_010 Hb_064122_010 Hb_001369_140 Hb_001369_140 Hb_064122_010--Hb_001369_140 Hb_009711_040 Hb_009711_040 Hb_064122_010--Hb_009711_040 Hb_000676_380 Hb_000676_380 Hb_064122_010--Hb_000676_380 Hb_003090_230 Hb_003090_230 Hb_064122_010--Hb_003090_230 Hb_009732_040 Hb_009732_040 Hb_064122_010--Hb_009732_040 Hb_142382_010 Hb_142382_010 Hb_064122_010--Hb_142382_010 Hb_000380_210 Hb_000380_210 Hb_001369_140--Hb_000380_210 Hb_000080_080 Hb_000080_080 Hb_001369_140--Hb_000080_080 Hb_032225_030 Hb_032225_030 Hb_001369_140--Hb_032225_030 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_002597_010 Hb_002597_010 Hb_001369_140--Hb_002597_010 Hb_000417_350 Hb_000417_350 Hb_009711_040--Hb_000417_350 Hb_020805_110 Hb_020805_110 Hb_009711_040--Hb_020805_110 Hb_009711_040--Hb_000676_380 Hb_003171_070 Hb_003171_070 Hb_009711_040--Hb_003171_070 Hb_000306_050 Hb_000306_050 Hb_009711_040--Hb_000306_050 Hb_009711_040--Hb_003090_230 Hb_000676_380--Hb_003090_230 Hb_000676_380--Hb_020805_110 Hb_000676_380--Hb_003171_070 Hb_001856_150 Hb_001856_150 Hb_000676_380--Hb_001856_150 Hb_004875_040 Hb_004875_040 Hb_000676_380--Hb_004875_040 Hb_003090_230--Hb_020805_110 Hb_021418_010 Hb_021418_010 Hb_003090_230--Hb_021418_010 Hb_003090_230--Hb_004875_040 Hb_001596_030 Hb_001596_030 Hb_003090_230--Hb_001596_030 Hb_011139_010 Hb_011139_010 Hb_009732_040--Hb_011139_010 Hb_008727_030 Hb_008727_030 Hb_009732_040--Hb_008727_030 Hb_003789_020 Hb_003789_020 Hb_009732_040--Hb_003789_020 Hb_039096_010 Hb_039096_010 Hb_009732_040--Hb_039096_010 Hb_182831_020 Hb_182831_020 Hb_009732_040--Hb_182831_020 Hb_142382_010--Hb_003090_230 Hb_142382_010--Hb_000676_380 Hb_142382_010--Hb_004875_040 Hb_142382_010--Hb_001856_150 Hb_001775_130 Hb_001775_130 Hb_142382_010--Hb_001775_130 Hb_142382_010--Hb_020805_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121571 0.18209 1.76832 0.0389853 0.0210809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0259502 0.142949 0.0782591 1.78494 0.109126

CAGE analysis