Hb_023827_020

Information

Type -
Description -
Location Contig23827: 8909-14743
Sequence    

Annotation

kegg
ID pxb:103958338
description glucan endo-1,3-beta-glucosidase 14-like
nr
ID AAY25165.1
description beta-1,3-glucanase 1 [Ziziphus jujuba]
swissprot
ID Q8L868
description Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1
trembl
ID Q4ZGK1
description Beta-1,3-glucanase 1 OS=Ziziphus jujuba GN=Glu-1 PE=2 SV=1
Gene Ontology
ID GO:0031225
description glucan endo- -beta-glucosidase 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24988: 9265-11859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023827_020 0.0 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
2 Hb_000381_110 0.1243938667 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
3 Hb_100147_010 0.1347972404 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
4 Hb_001673_100 0.1440675645 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
5 Hb_000824_050 0.1446581713 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
6 Hb_005914_140 0.1469149137 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
7 Hb_003044_080 0.1496288832 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
8 Hb_001946_310 0.1519628335 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
9 Hb_004870_040 0.1563463205 - - -
10 Hb_009193_100 0.1576418986 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
11 Hb_001318_050 0.158630164 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_002170_020 0.1614549527 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
13 Hb_000800_090 0.163686759 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
14 Hb_000406_150 0.1642844583 - - sodium/hydrogen exchanger, putative [Ricinus communis]
15 Hb_000548_070 0.1682910129 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
16 Hb_004094_020 0.173110911 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
17 Hb_029385_010 0.173428666 - - CTP synthase family protein [Populus trichocarpa]
18 Hb_015778_030 0.175175755 - - PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
19 Hb_001510_020 0.1753566606 - - Diaminopimelate epimerase, putative [Ricinus communis]
20 Hb_003305_020 0.1757341729 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_023827_020 Hb_023827_020 Hb_000381_110 Hb_000381_110 Hb_023827_020--Hb_000381_110 Hb_100147_010 Hb_100147_010 Hb_023827_020--Hb_100147_010 Hb_001673_100 Hb_001673_100 Hb_023827_020--Hb_001673_100 Hb_000824_050 Hb_000824_050 Hb_023827_020--Hb_000824_050 Hb_005914_140 Hb_005914_140 Hb_023827_020--Hb_005914_140 Hb_003044_080 Hb_003044_080 Hb_023827_020--Hb_003044_080 Hb_001971_060 Hb_001971_060 Hb_000381_110--Hb_001971_060 Hb_000381_110--Hb_100147_010 Hb_000025_190 Hb_000025_190 Hb_000381_110--Hb_000025_190 Hb_000251_030 Hb_000251_030 Hb_000381_110--Hb_000251_030 Hb_001221_020 Hb_001221_020 Hb_000381_110--Hb_001221_020 Hb_002631_010 Hb_002631_010 Hb_000381_110--Hb_002631_010 Hb_100147_010--Hb_000251_030 Hb_029385_010 Hb_029385_010 Hb_100147_010--Hb_029385_010 Hb_100147_010--Hb_001971_060 Hb_001510_020 Hb_001510_020 Hb_100147_010--Hb_001510_020 Hb_001623_160 Hb_001623_160 Hb_100147_010--Hb_001623_160 Hb_002908_060 Hb_002908_060 Hb_001673_100--Hb_002908_060 Hb_002631_130 Hb_002631_130 Hb_001673_100--Hb_002631_130 Hb_000548_070 Hb_000548_070 Hb_001673_100--Hb_000548_070 Hb_003098_080 Hb_003098_080 Hb_001673_100--Hb_003098_080 Hb_000950_010 Hb_000950_010 Hb_001673_100--Hb_000950_010 Hb_004870_040 Hb_004870_040 Hb_001673_100--Hb_004870_040 Hb_135757_020 Hb_135757_020 Hb_000824_050--Hb_135757_020 Hb_006922_090 Hb_006922_090 Hb_000824_050--Hb_006922_090 Hb_000679_190 Hb_000679_190 Hb_000824_050--Hb_000679_190 Hb_004094_020 Hb_004094_020 Hb_000824_050--Hb_004094_020 Hb_001946_310 Hb_001946_310 Hb_000824_050--Hb_001946_310 Hb_000928_190 Hb_000928_190 Hb_005914_140--Hb_000928_190 Hb_006683_020 Hb_006683_020 Hb_005914_140--Hb_006683_020 Hb_001318_050 Hb_001318_050 Hb_005914_140--Hb_001318_050 Hb_005914_140--Hb_004094_020 Hb_132880_040 Hb_132880_040 Hb_005914_140--Hb_132880_040 Hb_019280_010 Hb_019280_010 Hb_005914_140--Hb_019280_010 Hb_003044_080--Hb_000548_070 Hb_000800_090 Hb_000800_090 Hb_003044_080--Hb_000800_090 Hb_009615_060 Hb_009615_060 Hb_003044_080--Hb_009615_060 Hb_001728_140 Hb_001728_140 Hb_003044_080--Hb_001728_140 Hb_003044_080--Hb_002631_130 Hb_003044_080--Hb_000950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.758344 3.99229 1.6711 14.1407 1.20449 1.41241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34783 4.20104 7.7626 12.9321 6.16893

CAGE analysis