Hb_004870_040

Information

Type -
Description -
Location Contig4870: 63804-64268
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dbp3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45044: 63831-65421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004870_040 0.0 - - -
2 Hb_002908_060 0.1261696412 - - unnamed protein product, partial [Coffea canephora]
3 Hb_001673_100 0.1381782316 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
4 Hb_022593_010 0.1505382826 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
5 Hb_000946_110 0.1554558266 - - GTP cyclohydrolase I, putative [Ricinus communis]
6 Hb_023827_020 0.1563463205 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
7 Hb_009711_050 0.1566729069 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
8 Hb_001953_080 0.1605643854 - - pseudouridine synthase family protein, partial [Manihot esculenta]
9 Hb_007383_020 0.1621633328 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000950_010 0.1624770123 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
11 Hb_012022_050 0.1644491405 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
12 Hb_000525_090 0.1664248086 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_002876_270 0.1683002577 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
14 Hb_010815_020 0.1693948045 - - unnamed protein product [Vitis vinifera]
15 Hb_002043_040 0.1721860751 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
16 Hb_000297_120 0.1732932349 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
17 Hb_001318_050 0.1733014538 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_000548_070 0.1736211404 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
19 Hb_000406_150 0.1736324468 - - sodium/hydrogen exchanger, putative [Ricinus communis]
20 Hb_000723_170 0.1752907055 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_004870_040 Hb_004870_040 Hb_002908_060 Hb_002908_060 Hb_004870_040--Hb_002908_060 Hb_001673_100 Hb_001673_100 Hb_004870_040--Hb_001673_100 Hb_022593_010 Hb_022593_010 Hb_004870_040--Hb_022593_010 Hb_000946_110 Hb_000946_110 Hb_004870_040--Hb_000946_110 Hb_023827_020 Hb_023827_020 Hb_004870_040--Hb_023827_020 Hb_009711_050 Hb_009711_050 Hb_004870_040--Hb_009711_050 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_000053_060 Hb_000053_060 Hb_002908_060--Hb_000053_060 Hb_002908_060--Hb_001673_100 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_003098_080 Hb_003098_080 Hb_002908_060--Hb_003098_080 Hb_002631_130 Hb_002631_130 Hb_001673_100--Hb_002631_130 Hb_000548_070 Hb_000548_070 Hb_001673_100--Hb_000548_070 Hb_001673_100--Hb_003098_080 Hb_001673_100--Hb_000950_010 Hb_158163_010 Hb_158163_010 Hb_022593_010--Hb_158163_010 Hb_000077_200 Hb_000077_200 Hb_022593_010--Hb_000077_200 Hb_026889_040 Hb_026889_040 Hb_022593_010--Hb_026889_040 Hb_000016_170 Hb_000016_170 Hb_022593_010--Hb_000016_170 Hb_001953_080 Hb_001953_080 Hb_022593_010--Hb_001953_080 Hb_000297_120 Hb_000297_120 Hb_000946_110--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_000946_110--Hb_004046_030 Hb_002804_040 Hb_002804_040 Hb_000946_110--Hb_002804_040 Hb_002043_040 Hb_002043_040 Hb_000946_110--Hb_002043_040 Hb_000309_050 Hb_000309_050 Hb_000946_110--Hb_000309_050 Hb_006277_010 Hb_006277_010 Hb_000946_110--Hb_006277_010 Hb_000381_110 Hb_000381_110 Hb_023827_020--Hb_000381_110 Hb_100147_010 Hb_100147_010 Hb_023827_020--Hb_100147_010 Hb_023827_020--Hb_001673_100 Hb_000824_050 Hb_000824_050 Hb_023827_020--Hb_000824_050 Hb_005914_140 Hb_005914_140 Hb_023827_020--Hb_005914_140 Hb_003044_080 Hb_003044_080 Hb_023827_020--Hb_003044_080 Hb_004607_070 Hb_004607_070 Hb_009711_050--Hb_004607_070 Hb_003207_020 Hb_003207_020 Hb_009711_050--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_009711_050--Hb_000928_190 Hb_002611_010 Hb_002611_010 Hb_009711_050--Hb_002611_010 Hb_033152_070 Hb_033152_070 Hb_009711_050--Hb_033152_070 Hb_000613_070 Hb_000613_070 Hb_009711_050--Hb_000613_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.970204 1.93035 0.662756 9.83459 1.69166 1.62365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12931 5.41531 5.8083 9.54568 10.2869

CAGE analysis