Hb_000077_200

Information

Type -
Description -
Location Contig77: 161071-163821
Sequence    

Annotation

kegg
ID tcc:TCM_008097
description Thioredoxin M-type 4 isoform 1
nr
ID XP_012088295.1
description PREDICTED: thioredoxin [Jatropha curcas]
swissprot
ID Q9XGS0
description Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1
trembl
ID A0A067JMU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25795 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin m-type 4 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57589: 142577-164557 , PASA_asmbl_57590: 142579-164336
cDNA
(Sanger)
(ID:Location)		 053_I19.ab1: 142577-163796

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_200 0.0 - - PREDICTED: thioredoxin [Jatropha curcas]
2 Hb_000016_170 0.1159168951 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002320_080 0.1266049112 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
4 Hb_000946_100 0.1340635913 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
5 Hb_005167_030 0.1343832914 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
6 Hb_002154_110 0.1450453848 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_022593_010 0.1511442233 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
8 Hb_008642_030 0.1512236312 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
9 Hb_003103_010 0.1629056285 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005496_090 0.17080626 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
11 Hb_000260_790 0.1735460768 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
12 Hb_008206_100 0.1749247522 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
13 Hb_158163_010 0.1759986034 - - protein binding protein, putative [Ricinus communis]
14 Hb_000120_770 0.1778010056 - - conserved hypothetical protein [Ricinus communis]
15 Hb_077399_010 0.1797857413 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
16 Hb_001242_080 0.1821089538 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
17 Hb_027760_020 0.1839055836 - - hypothetical protein M569_04462, partial [Genlisea aurea]
18 Hb_002876_020 0.185439935 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
19 Hb_003880_040 0.1854707103 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
20 Hb_000056_250 0.1913927118 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_200 Hb_000077_200 Hb_000016_170 Hb_000016_170 Hb_000077_200--Hb_000016_170 Hb_002320_080 Hb_002320_080 Hb_000077_200--Hb_002320_080 Hb_000946_100 Hb_000946_100 Hb_000077_200--Hb_000946_100 Hb_005167_030 Hb_005167_030 Hb_000077_200--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_000077_200--Hb_002154_110 Hb_022593_010 Hb_022593_010 Hb_000077_200--Hb_022593_010 Hb_000016_170--Hb_005167_030 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_005496_090 Hb_005496_090 Hb_000016_170--Hb_005496_090 Hb_008642_030 Hb_008642_030 Hb_000016_170--Hb_008642_030 Hb_000016_170--Hb_002154_110 Hb_000016_170--Hb_000946_100 Hb_002320_080--Hb_000946_100 Hb_029920_020 Hb_029920_020 Hb_002320_080--Hb_029920_020 Hb_026889_040 Hb_026889_040 Hb_002320_080--Hb_026889_040 Hb_001307_110 Hb_001307_110 Hb_002320_080--Hb_001307_110 Hb_015675_030 Hb_015675_030 Hb_002320_080--Hb_015675_030 Hb_006573_290 Hb_006573_290 Hb_000946_100--Hb_006573_290 Hb_002876_020 Hb_002876_020 Hb_000946_100--Hb_002876_020 Hb_000946_100--Hb_002154_110 Hb_002677_020 Hb_002677_020 Hb_000946_100--Hb_002677_020 Hb_000946_100--Hb_005496_090 Hb_005167_030--Hb_008642_030 Hb_005167_030--Hb_005496_090 Hb_005167_030--Hb_002154_110 Hb_027751_060 Hb_027751_060 Hb_005167_030--Hb_027751_060 Hb_000292_060 Hb_000292_060 Hb_005167_030--Hb_000292_060 Hb_003103_010 Hb_003103_010 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_008642_030 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_158163_010 Hb_158163_010 Hb_022593_010--Hb_158163_010 Hb_004870_040 Hb_004870_040 Hb_022593_010--Hb_004870_040 Hb_022593_010--Hb_026889_040 Hb_022593_010--Hb_000016_170 Hb_001953_080 Hb_001953_080 Hb_022593_010--Hb_001953_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84266 1.96541 6.36 54.0006 0.820179 12.0443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9355 52.5577 34.0469 20.1092 42.58

CAGE analysis