Hb_022593_010

Information

Type -
Description -
Location Contig22593: 4344-15953
Sequence    

Annotation

kegg
ID egr:104425166
description gamma aminobutyrate transaminase 3, chloroplastic
nr
ID XP_012081034.1
description PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q84P52
description Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum GN=GABA-TP3 PE=1 SV=1
trembl
ID A0A067K2H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16670 PE=3 SV=1
Gene Ontology
ID GO:0008483
description gamma aminobutyrate transaminase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022593_010 0.0 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
2 Hb_158163_010 0.1504728358 - - protein binding protein, putative [Ricinus communis]
3 Hb_004870_040 0.1505382826 - - -
4 Hb_000077_200 0.1511442233 - - PREDICTED: thioredoxin [Jatropha curcas]
5 Hb_026889_040 0.1645339296 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_000016_170 0.1650531819 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001953_080 0.1689395814 - - pseudouridine synthase family protein, partial [Manihot esculenta]
8 Hb_000946_110 0.1725512105 - - GTP cyclohydrolase I, putative [Ricinus communis]
9 Hb_005167_030 0.1740626935 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
10 Hb_002876_270 0.1746223004 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
11 Hb_008642_030 0.176071825 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
12 Hb_000946_100 0.17711465 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
13 Hb_027073_010 0.1784079884 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
14 Hb_088327_010 0.1816637602 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
15 Hb_002783_110 0.1820174947 - - Zeamatin precursor, putative [Ricinus communis]
16 Hb_001242_080 0.1820181801 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
17 Hb_002320_080 0.1820265908 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
18 Hb_002043_040 0.1841237182 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
19 Hb_000019_180 0.1846780088 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
20 Hb_001142_010 0.1860550265 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]

Gene co-expression network

sample Hb_022593_010 Hb_022593_010 Hb_158163_010 Hb_158163_010 Hb_022593_010--Hb_158163_010 Hb_004870_040 Hb_004870_040 Hb_022593_010--Hb_004870_040 Hb_000077_200 Hb_000077_200 Hb_022593_010--Hb_000077_200 Hb_026889_040 Hb_026889_040 Hb_022593_010--Hb_026889_040 Hb_000016_170 Hb_000016_170 Hb_022593_010--Hb_000016_170 Hb_001953_080 Hb_001953_080 Hb_022593_010--Hb_001953_080 Hb_008642_030 Hb_008642_030 Hb_158163_010--Hb_008642_030 Hb_012022_050 Hb_012022_050 Hb_158163_010--Hb_012022_050 Hb_158163_010--Hb_001953_080 Hb_000136_100 Hb_000136_100 Hb_158163_010--Hb_000136_100 Hb_007383_020 Hb_007383_020 Hb_158163_010--Hb_007383_020 Hb_002154_110 Hb_002154_110 Hb_158163_010--Hb_002154_110 Hb_002908_060 Hb_002908_060 Hb_004870_040--Hb_002908_060 Hb_001673_100 Hb_001673_100 Hb_004870_040--Hb_001673_100 Hb_000946_110 Hb_000946_110 Hb_004870_040--Hb_000946_110 Hb_023827_020 Hb_023827_020 Hb_004870_040--Hb_023827_020 Hb_009711_050 Hb_009711_050 Hb_004870_040--Hb_009711_050 Hb_000077_200--Hb_000016_170 Hb_002320_080 Hb_002320_080 Hb_000077_200--Hb_002320_080 Hb_000946_100 Hb_000946_100 Hb_000077_200--Hb_000946_100 Hb_005167_030 Hb_005167_030 Hb_000077_200--Hb_005167_030 Hb_000077_200--Hb_002154_110 Hb_003878_050 Hb_003878_050 Hb_026889_040--Hb_003878_050 Hb_000019_180 Hb_000019_180 Hb_026889_040--Hb_000019_180 Hb_004158_020 Hb_004158_020 Hb_026889_040--Hb_004158_020 Hb_091349_010 Hb_091349_010 Hb_026889_040--Hb_091349_010 Hb_000703_280 Hb_000703_280 Hb_026889_040--Hb_000703_280 Hb_011861_100 Hb_011861_100 Hb_026889_040--Hb_011861_100 Hb_000016_170--Hb_005167_030 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_005496_090 Hb_005496_090 Hb_000016_170--Hb_005496_090 Hb_000016_170--Hb_008642_030 Hb_000016_170--Hb_002154_110 Hb_000016_170--Hb_000946_100 Hb_011249_020 Hb_011249_020 Hb_001953_080--Hb_011249_020 Hb_003020_260 Hb_003020_260 Hb_001953_080--Hb_003020_260 Hb_001307_030 Hb_001307_030 Hb_001953_080--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_000649_140 Hb_000649_140 Hb_001953_080--Hb_000649_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.16676 0.10015 0.127969 1.13252 0.0378013 0.235018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.234194 0.737009 0.867241 0.762473 0.820983

CAGE analysis