Hb_026889_040

Information

Type -
Description -
Location Contig26889: 47722-54345
Sequence    

Annotation

kegg
ID pop:POPTR_0016s01150g
description hypothetical protein
nr
ID XP_012074030.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067KN54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09513 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28096: 51752-51863 , PASA_asmbl_28097: 52257-54369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026889_040 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_003878_050 0.1338324163 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
3 Hb_000019_180 0.1365528648 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
4 Hb_004158_020 0.1399193381 - - Rab1 [Hevea brasiliensis]
5 Hb_091349_010 0.1444825912 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
6 Hb_000703_280 0.1448950406 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
7 Hb_011861_100 0.1478181437 - - amino acid transporter, putative [Ricinus communis]
8 Hb_002783_110 0.1505967956 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_033413_010 0.1512087556 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_006903_030 0.1534051509 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
11 Hb_001754_080 0.1583146126 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
12 Hb_002876_270 0.1586227876 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
13 Hb_000402_130 0.1606363055 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_003305_040 0.1618833422 - - AP47/50p mRNA family protein [Populus trichocarpa]
15 Hb_021943_090 0.1629534309 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
16 Hb_000023_310 0.1629831287 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
17 Hb_002320_080 0.1639336389 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
18 Hb_002110_100 0.1639543521 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_000310_100 0.1643776318 - - conserved hypothetical protein [Ricinus communis]
20 Hb_022593_010 0.1645339296 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_026889_040 Hb_026889_040 Hb_003878_050 Hb_003878_050 Hb_026889_040--Hb_003878_050 Hb_000019_180 Hb_000019_180 Hb_026889_040--Hb_000019_180 Hb_004158_020 Hb_004158_020 Hb_026889_040--Hb_004158_020 Hb_091349_010 Hb_091349_010 Hb_026889_040--Hb_091349_010 Hb_000703_280 Hb_000703_280 Hb_026889_040--Hb_000703_280 Hb_011861_100 Hb_011861_100 Hb_026889_040--Hb_011861_100 Hb_000477_040 Hb_000477_040 Hb_003878_050--Hb_000477_040 Hb_003878_050--Hb_000703_280 Hb_003878_050--Hb_004158_020 Hb_001369_630 Hb_001369_630 Hb_003878_050--Hb_001369_630 Hb_000935_040 Hb_000935_040 Hb_003878_050--Hb_000935_040 Hb_003305_040 Hb_003305_040 Hb_000019_180--Hb_003305_040 Hb_000800_090 Hb_000800_090 Hb_000019_180--Hb_000800_090 Hb_002392_010 Hb_002392_010 Hb_000019_180--Hb_002392_010 Hb_006277_010 Hb_006277_010 Hb_000019_180--Hb_006277_010 Hb_005701_120 Hb_005701_120 Hb_000019_180--Hb_005701_120 Hb_002110_100 Hb_002110_100 Hb_000019_180--Hb_002110_100 Hb_004158_020--Hb_002110_100 Hb_000402_130 Hb_000402_130 Hb_004158_020--Hb_000402_130 Hb_032920_070 Hb_032920_070 Hb_004158_020--Hb_032920_070 Hb_001754_080 Hb_001754_080 Hb_004158_020--Hb_001754_080 Hb_004007_110 Hb_004007_110 Hb_004158_020--Hb_004007_110 Hb_000023_310 Hb_000023_310 Hb_004158_020--Hb_000023_310 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_033152_070 Hb_033152_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_000103_250 Hb_000103_250 Hb_000703_280--Hb_000103_250 Hb_000012_080 Hb_000012_080 Hb_000703_280--Hb_000012_080 Hb_021943_090 Hb_021943_090 Hb_000703_280--Hb_021943_090 Hb_001904_050 Hb_001904_050 Hb_000703_280--Hb_001904_050 Hb_000244_170 Hb_000244_170 Hb_000703_280--Hb_000244_170 Hb_000252_100 Hb_000252_100 Hb_011861_100--Hb_000252_100 Hb_011861_100--Hb_003305_040 Hb_000215_280 Hb_000215_280 Hb_011861_100--Hb_000215_280 Hb_000505_150 Hb_000505_150 Hb_011861_100--Hb_000505_150 Hb_000454_090 Hb_000454_090 Hb_011861_100--Hb_000454_090 Hb_007386_040 Hb_007386_040 Hb_011861_100--Hb_007386_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11881 2.08805 6.69984 21.4487 1.03853 3.37305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2899 7.90176 14.9125 7.78042 9.27202

CAGE analysis