Hb_001754_080

Information

Type -
Description -
Location Contig1754: 52403-52747
Sequence    

Annotation

kegg
ID rcu:RCOM_0680920
description RALFL33, putative
nr
ID XP_012083935.1
description PREDICTED: protein RALF-like 33 [Jatropha curcas]
swissprot
ID Q8L9P8
description Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
trembl
ID A0A067JV88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18872 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16796: 52231-52805
cDNA
(Sanger)
(ID:Location)		 017_J21.ab1: 52231-52805 , 034_C07.ab1: 52316-52802 , 052_E19.ab1: 52260-52802

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_080 0.0 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
2 Hb_000060_050 0.1037380562 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
3 Hb_004158_020 0.1055542785 - - Rab1 [Hevea brasiliensis]
4 Hb_003305_040 0.1057315423 - - AP47/50p mRNA family protein [Populus trichocarpa]
5 Hb_001489_110 0.1068521439 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
6 Hb_002110_100 0.1070577819 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_002677_020 0.1073382622 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
8 Hb_013394_050 0.1113307902 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
9 Hb_001865_090 0.1141694324 - - hypothetical protein VITISV_005773 [Vitis vinifera]
10 Hb_001671_030 0.1143063766 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
11 Hb_000742_020 0.1168709002 - - ARF GTPase activator, putative [Ricinus communis]
12 Hb_000110_120 0.1176612625 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
13 Hb_008147_090 0.1188714471 - - conserved hypothetical protein [Ricinus communis]
14 Hb_145880_020 0.1223945948 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
15 Hb_004627_030 0.1249080089 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
16 Hb_005016_040 0.1252186369 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
17 Hb_001195_060 0.1255298121 - - Protein yrdA, putative [Ricinus communis]
18 Hb_000946_100 0.126498768 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
19 Hb_002301_160 0.1267500072 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
20 Hb_008566_030 0.1270515729 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]

Gene co-expression network

sample Hb_001754_080 Hb_001754_080 Hb_000060_050 Hb_000060_050 Hb_001754_080--Hb_000060_050 Hb_004158_020 Hb_004158_020 Hb_001754_080--Hb_004158_020 Hb_003305_040 Hb_003305_040 Hb_001754_080--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_001754_080--Hb_001489_110 Hb_002110_100 Hb_002110_100 Hb_001754_080--Hb_002110_100 Hb_002677_020 Hb_002677_020 Hb_001754_080--Hb_002677_020 Hb_000060_050--Hb_003305_040 Hb_000060_050--Hb_001489_110 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_004158_020--Hb_002110_100 Hb_000402_130 Hb_000402_130 Hb_004158_020--Hb_000402_130 Hb_032920_070 Hb_032920_070 Hb_004158_020--Hb_032920_070 Hb_004007_110 Hb_004007_110 Hb_004158_020--Hb_004007_110 Hb_000023_310 Hb_000023_310 Hb_004158_020--Hb_000023_310 Hb_003305_040--Hb_000252_100 Hb_003305_040--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_002110_100--Hb_032920_070 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_000733_180 Hb_000733_180 Hb_002677_020--Hb_000733_180 Hb_008566_030 Hb_008566_030 Hb_002677_020--Hb_008566_030 Hb_002677_020--Hb_001489_110 Hb_000403_070 Hb_000403_070 Hb_002677_020--Hb_000403_070 Hb_005016_040 Hb_005016_040 Hb_002677_020--Hb_005016_040 Hb_006153_060 Hb_006153_060 Hb_002677_020--Hb_006153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.8397 60.192 116.138 297.25 52.7839 62.8596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.2593 204.567 183.069 73.7891 142.762

CAGE analysis