Hb_006153_060

Information

Type -
Description -
Location Contig6153: 73102-74442
Sequence    

Annotation

kegg
ID rcu:RCOM_0251370
description catalytic, putative
nr
ID XP_002529790.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q7XJ98
description Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1
trembl
ID B9SUV9
description Catalytic, putative OS=Ricinus communis GN=RCOM_0251370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51183: 73276-74591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_060 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_002811_150 0.0930833488 - - PREDICTED: uncharacterized protein LOC105647666 [Jatropha curcas]
3 Hb_002677_020 0.1008701901 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
4 Hb_002239_050 0.1112284459 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
5 Hb_000035_480 0.1168308375 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
6 Hb_140627_010 0.1224376612 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000403_070 0.1275763309 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_007192_030 0.1306129836 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
9 Hb_005843_140 0.1319499725 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
10 Hb_000465_070 0.1324978968 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
11 Hb_000622_290 0.1326214986 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
12 Hb_001671_030 0.1326345163 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
13 Hb_005016_040 0.1340247524 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
14 Hb_006683_070 0.1375353671 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
15 Hb_000457_290 0.1379464265 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
16 Hb_002303_020 0.1396194435 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
17 Hb_044653_040 0.1410284906 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
18 Hb_002995_050 0.1413741548 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
19 Hb_000392_550 0.1429707722 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_027298_010 0.1429778732 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006153_060 Hb_006153_060 Hb_002811_150 Hb_002811_150 Hb_006153_060--Hb_002811_150 Hb_002677_020 Hb_002677_020 Hb_006153_060--Hb_002677_020 Hb_002239_050 Hb_002239_050 Hb_006153_060--Hb_002239_050 Hb_000035_480 Hb_000035_480 Hb_006153_060--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_006153_060--Hb_140627_010 Hb_000403_070 Hb_000403_070 Hb_006153_060--Hb_000403_070 Hb_000599_210 Hb_000599_210 Hb_002811_150--Hb_000599_210 Hb_000622_290 Hb_000622_290 Hb_002811_150--Hb_000622_290 Hb_002762_110 Hb_002762_110 Hb_002811_150--Hb_002762_110 Hb_171718_010 Hb_171718_010 Hb_002811_150--Hb_171718_010 Hb_007192_030 Hb_007192_030 Hb_002811_150--Hb_007192_030 Hb_000733_180 Hb_000733_180 Hb_002677_020--Hb_000733_180 Hb_008566_030 Hb_008566_030 Hb_002677_020--Hb_008566_030 Hb_001489_110 Hb_001489_110 Hb_002677_020--Hb_001489_110 Hb_002677_020--Hb_000403_070 Hb_005016_040 Hb_005016_040 Hb_002677_020--Hb_005016_040 Hb_000847_060 Hb_000847_060 Hb_002239_050--Hb_000847_060 Hb_000419_020 Hb_000419_020 Hb_002239_050--Hb_000419_020 Hb_000155_160 Hb_000155_160 Hb_002239_050--Hb_000155_160 Hb_002631_180 Hb_002631_180 Hb_002239_050--Hb_002631_180 Hb_163256_020 Hb_163256_020 Hb_002239_050--Hb_163256_020 Hb_000465_070 Hb_000465_070 Hb_002239_050--Hb_000465_070 Hb_000035_480--Hb_000465_070 Hb_000035_480--Hb_140627_010 Hb_000457_290 Hb_000457_290 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_140627_010--Hb_000403_070 Hb_140627_010--Hb_000457_290 Hb_001240_010 Hb_001240_010 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_140627_010--Hb_000392_550 Hb_000403_070--Hb_006846_150 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_000403_070--Hb_001240_010 Hb_000403_070--Hb_000465_070 Hb_000403_070--Hb_000457_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.97573 7.42224 6.77425 13.2043 2.34218 4.36091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79786 19.2795 7.79717 5.303 15.7262

CAGE analysis