Hb_000946_110

Information

Type -
Description -
Location Contig946: 143667-146148
Sequence    

Annotation

kegg
ID rcu:RCOM_1416900
description GTP cyclohydrolase I, putative (EC:3.5.4.16)
nr
ID XP_002531084.1
description GTP cyclohydrolase I, putative [Ricinus communis]
swissprot
ID Q8VYU3
description GTP cyclohydrolase 1 OS=Solanum lycopersicum GN=GCH1 PE=1 SV=1
trembl
ID B9SYL5
description GTP cyclohydrolase I, putative OS=Ricinus communis GN=RCOM_1416900 PE=4 SV=1
Gene Ontology
ID GO:0005737
description gtp cyclohydrolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63264: 143625-144738 , PASA_asmbl_63266: 145101-146226
cDNA
(Sanger)
(ID:Location)		 042_I13.ab1: 145818-146224 , 044_O24.ab1: 145840-146226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_110 0.0 - - GTP cyclohydrolase I, putative [Ricinus communis]
2 Hb_000297_120 0.092665392 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
3 Hb_004046_030 0.0945903817 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
4 Hb_002804_040 0.1009944888 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
5 Hb_002043_040 0.1040689562 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
6 Hb_000309_050 0.1043466205 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
7 Hb_006277_010 0.1094608615 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
8 Hb_002611_010 0.1095944146 - - amino acid transporter, putative [Ricinus communis]
9 Hb_003206_110 0.1142441055 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
10 Hb_001080_300 0.1144848321 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
11 Hb_000240_030 0.1174283333 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006059_010 0.1184235575 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
13 Hb_000613_070 0.1190102147 - - -
14 Hb_000185_220 0.1192327827 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
15 Hb_003207_020 0.1196608618 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
16 Hb_011249_020 0.1197001116 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
17 Hb_000800_090 0.1214871445 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
18 Hb_011606_020 0.1219242599 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
19 Hb_000525_090 0.1228451949 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_000019_180 0.1230614613 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000946_110 Hb_000946_110 Hb_000297_120 Hb_000297_120 Hb_000946_110--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_000946_110--Hb_004046_030 Hb_002804_040 Hb_002804_040 Hb_000946_110--Hb_002804_040 Hb_002043_040 Hb_002043_040 Hb_000946_110--Hb_002043_040 Hb_000309_050 Hb_000309_050 Hb_000946_110--Hb_000309_050 Hb_006277_010 Hb_006277_010 Hb_000946_110--Hb_006277_010 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000185_220 Hb_000185_220 Hb_000297_120--Hb_000185_220 Hb_006683_070 Hb_006683_070 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_003206_110 Hb_003206_110 Hb_004046_030--Hb_003206_110 Hb_004046_030--Hb_006277_010 Hb_170138_010 Hb_170138_010 Hb_004046_030--Hb_170138_010 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_002804_040--Hb_000297_120 Hb_002804_040--Hb_004046_030 Hb_000025_190 Hb_000025_190 Hb_002804_040--Hb_000025_190 Hb_001842_010 Hb_001842_010 Hb_002804_040--Hb_001842_010 Hb_002804_040--Hb_003206_110 Hb_002043_040--Hb_000297_120 Hb_000060_050 Hb_000060_050 Hb_002043_040--Hb_000060_050 Hb_001789_150 Hb_001789_150 Hb_002043_040--Hb_001789_150 Hb_000406_130 Hb_000406_130 Hb_002043_040--Hb_000406_130 Hb_001898_080 Hb_001898_080 Hb_002043_040--Hb_001898_080 Hb_000309_050--Hb_000185_220 Hb_000309_050--Hb_003206_110 Hb_004480_100 Hb_004480_100 Hb_000309_050--Hb_004480_100 Hb_001975_150 Hb_001975_150 Hb_000309_050--Hb_001975_150 Hb_000504_180 Hb_000504_180 Hb_000309_050--Hb_000504_180 Hb_000309_050--Hb_000297_120 Hb_006277_010--Hb_003206_110 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_006277_010--Hb_000185_220 Hb_005601_040 Hb_005601_040 Hb_006277_010--Hb_005601_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31216 3.86117 3.31164 16.3392 2.18743 4.2137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01438 5.7724 9.34098 8.06719 14.8462

CAGE analysis