Hb_002043_040

Information

Type -
Description -
Location Contig2043: 72923-77459
Sequence    

Annotation

kegg
ID rcu:RCOM_1486110
description hypothetical protein
nr
ID XP_012069039.1
description PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24816 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20972: 73118-77456 , PASA_asmbl_20973: 74924-75037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_040 0.0 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
2 Hb_000297_120 0.0992530691 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
3 Hb_000060_050 0.0995199384 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
4 Hb_001789_150 0.1004740882 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
5 Hb_000406_130 0.101606322 - - vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_000946_110 0.1040689562 - - GTP cyclohydrolase I, putative [Ricinus communis]
7 Hb_001898_080 0.1045800353 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
8 Hb_003529_030 0.106043006 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
9 Hb_007416_090 0.1062335603 - - UDP-sugar transporter, putative [Ricinus communis]
10 Hb_002660_170 0.1072567867 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
11 Hb_001352_020 0.1090349594 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
12 Hb_000116_260 0.1095473247 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
13 Hb_000471_110 0.1103072085 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
14 Hb_003141_070 0.1105777462 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
15 Hb_000928_110 0.1111747134 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
16 Hb_001307_030 0.1115472861 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
17 Hb_000505_150 0.1125302933 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
18 Hb_185255_010 0.1126205844 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
19 Hb_000110_140 0.1129634264 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
20 Hb_004935_060 0.1136689775 - - Uncharacterized protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_002043_040 Hb_002043_040 Hb_000297_120 Hb_000297_120 Hb_002043_040--Hb_000297_120 Hb_000060_050 Hb_000060_050 Hb_002043_040--Hb_000060_050 Hb_001789_150 Hb_001789_150 Hb_002043_040--Hb_001789_150 Hb_000406_130 Hb_000406_130 Hb_002043_040--Hb_000406_130 Hb_000946_110 Hb_000946_110 Hb_002043_040--Hb_000946_110 Hb_001898_080 Hb_001898_080 Hb_002043_040--Hb_001898_080 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000185_220 Hb_000185_220 Hb_000297_120--Hb_000185_220 Hb_006683_070 Hb_006683_070 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_003305_040 Hb_003305_040 Hb_000060_050--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_000012_310 Hb_000012_310 Hb_001789_150--Hb_000012_310 Hb_000574_450 Hb_000574_450 Hb_001789_150--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_001789_150--Hb_010515_020 Hb_000497_300 Hb_000497_300 Hb_001789_150--Hb_000497_300 Hb_001352_020 Hb_001352_020 Hb_001789_150--Hb_001352_020 Hb_004480_100 Hb_004480_100 Hb_001789_150--Hb_004480_100 Hb_000471_110 Hb_000471_110 Hb_000406_130--Hb_000471_110 Hb_000406_130--Hb_001352_020 Hb_000479_140 Hb_000479_140 Hb_000406_130--Hb_000479_140 Hb_008176_010 Hb_008176_010 Hb_000406_130--Hb_008176_010 Hb_000116_260 Hb_000116_260 Hb_000406_130--Hb_000116_260 Hb_003376_250 Hb_003376_250 Hb_000406_130--Hb_003376_250 Hb_000946_110--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_000946_110--Hb_004046_030 Hb_002804_040 Hb_002804_040 Hb_000946_110--Hb_002804_040 Hb_000309_050 Hb_000309_050 Hb_000946_110--Hb_000309_050 Hb_006277_010 Hb_006277_010 Hb_000946_110--Hb_006277_010 Hb_007416_090 Hb_007416_090 Hb_001898_080--Hb_007416_090 Hb_001898_080--Hb_001789_150 Hb_000406_140 Hb_000406_140 Hb_001898_080--Hb_000406_140 Hb_003847_030 Hb_003847_030 Hb_001898_080--Hb_003847_030 Hb_000787_020 Hb_000787_020 Hb_001898_080--Hb_000787_020 Hb_000505_150 Hb_000505_150 Hb_001898_080--Hb_000505_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.28212 6.22209 2.49297 18.0525 4.33647 6.17851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.56982 10.5905 12.6374 9.2631 12.9667

CAGE analysis