Hb_003098_080

Information

Type -
Description -
Location Contig3098: 100486-101151
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32754: 84021-101096 , PASA_asmbl_32756: 100392-100976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003098_080 0.0 - - -
2 Hb_001452_210 0.1345900203 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
3 Hb_002908_060 0.1358535627 - - unnamed protein product, partial [Coffea canephora]
4 Hb_001673_100 0.1367481227 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
5 Hb_001318_050 0.1412273245 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_002539_020 0.1531260598 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
7 Hb_007383_020 0.156106281 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000227_070 0.1624439746 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
9 Hb_100147_010 0.166368492 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
10 Hb_000286_200 0.1677100216 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
11 Hb_004079_080 0.1712355844 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
12 Hb_142343_010 0.1749199609 - - ATP binding protein, putative [Ricinus communis]
13 Hb_010815_020 0.1754675348 - - unnamed protein product [Vitis vinifera]
14 Hb_004870_040 0.1759874819 - - -
15 Hb_000012_410 0.1772589956 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
16 Hb_001221_340 0.1782955015 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
17 Hb_098315_080 0.1817256262 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
18 Hb_000824_050 0.183032843 - - PREDICTED: nicotinate phosphoribosyltransferase 1 [Jatropha curcas]
19 Hb_006846_120 0.1836313519 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
20 Hb_000768_160 0.1838444779 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]

Gene co-expression network

sample Hb_003098_080 Hb_003098_080 Hb_001452_210 Hb_001452_210 Hb_003098_080--Hb_001452_210 Hb_002908_060 Hb_002908_060 Hb_003098_080--Hb_002908_060 Hb_001673_100 Hb_001673_100 Hb_003098_080--Hb_001673_100 Hb_001318_050 Hb_001318_050 Hb_003098_080--Hb_001318_050 Hb_002539_020 Hb_002539_020 Hb_003098_080--Hb_002539_020 Hb_007383_020 Hb_007383_020 Hb_003098_080--Hb_007383_020 Hb_052764_110 Hb_052764_110 Hb_001452_210--Hb_052764_110 Hb_098315_080 Hb_098315_080 Hb_001452_210--Hb_098315_080 Hb_000227_070 Hb_000227_070 Hb_001452_210--Hb_000227_070 Hb_179924_010 Hb_179924_010 Hb_001452_210--Hb_179924_010 Hb_001221_340 Hb_001221_340 Hb_001452_210--Hb_001221_340 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_000053_060 Hb_000053_060 Hb_002908_060--Hb_000053_060 Hb_002908_060--Hb_001673_100 Hb_004870_040 Hb_004870_040 Hb_002908_060--Hb_004870_040 Hb_002908_060--Hb_007383_020 Hb_002631_130 Hb_002631_130 Hb_001673_100--Hb_002631_130 Hb_000548_070 Hb_000548_070 Hb_001673_100--Hb_000548_070 Hb_001673_100--Hb_000950_010 Hb_001673_100--Hb_004870_040 Hb_001318_050--Hb_007383_020 Hb_005648_010 Hb_005648_010 Hb_001318_050--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_001318_050--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_001318_050--Hb_012678_020 Hb_004880_150 Hb_004880_150 Hb_001318_050--Hb_004880_150 Hb_000800_090 Hb_000800_090 Hb_001318_050--Hb_000800_090 Hb_002539_010 Hb_002539_010 Hb_002539_020--Hb_002539_010 Hb_006846_120 Hb_006846_120 Hb_002539_020--Hb_006846_120 Hb_008226_070 Hb_008226_070 Hb_002539_020--Hb_008226_070 Hb_007423_020 Hb_007423_020 Hb_002539_020--Hb_007423_020 Hb_100147_010 Hb_100147_010 Hb_002539_020--Hb_100147_010 Hb_000094_370 Hb_000094_370 Hb_002539_020--Hb_000094_370 Hb_007383_020--Hb_005648_010 Hb_007383_020--Hb_000025_190 Hb_007383_020--Hb_012678_020 Hb_007383_020--Hb_000800_090 Hb_000115_150 Hb_000115_150 Hb_007383_020--Hb_000115_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09875 3.42111 2.55351 14.1623 1.61332 6.88968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.73468 7.63317 7.48541 30.0223 14.5233

CAGE analysis