Hb_002471_260

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig2471: 267945-269570
Sequence    

Annotation

kegg
ID rcu:RCOM_1148660
description protein with unknown function
nr
ID XP_012072352.1
description PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04796 PE=4 SV=1
Gene Ontology
ID GO:0005622
description platz transcription factor family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_260 0.0 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
2 Hb_028872_150 0.1773699834 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
3 Hb_029921_030 0.1783731769 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003972_060 0.1787073742 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
5 Hb_002539_010 0.1849058387 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
6 Hb_011633_040 0.1874246996 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
7 Hb_021409_140 0.2007206054 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
8 Hb_005152_010 0.2029854754 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
9 Hb_158092_060 0.204374236 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
10 Hb_030982_060 0.2093117999 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006141_030 0.2121125157 - - -
12 Hb_011947_020 0.2142222066 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_002835_350 0.2165466099 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
14 Hb_003592_030 0.2167202161 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
15 Hb_000110_290 0.2190177413 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007545_140 0.219653574 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
17 Hb_002539_020 0.2243924138 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
18 Hb_000186_290 0.2246469076 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
19 Hb_001414_020 0.2269246872 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
20 Hb_164926_040 0.2277650738 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002471_260 Hb_002471_260 Hb_028872_150 Hb_028872_150 Hb_002471_260--Hb_028872_150 Hb_029921_030 Hb_029921_030 Hb_002471_260--Hb_029921_030 Hb_003972_060 Hb_003972_060 Hb_002471_260--Hb_003972_060 Hb_002539_010 Hb_002539_010 Hb_002471_260--Hb_002539_010 Hb_011633_040 Hb_011633_040 Hb_002471_260--Hb_011633_040 Hb_021409_140 Hb_021409_140 Hb_002471_260--Hb_021409_140 Hb_000453_240 Hb_000453_240 Hb_028872_150--Hb_000453_240 Hb_001673_100 Hb_001673_100 Hb_028872_150--Hb_001673_100 Hb_002170_020 Hb_002170_020 Hb_028872_150--Hb_002170_020 Hb_001510_020 Hb_001510_020 Hb_028872_150--Hb_001510_020 Hb_027380_190 Hb_027380_190 Hb_028872_150--Hb_027380_190 Hb_001040_150 Hb_001040_150 Hb_028872_150--Hb_001040_150 Hb_029921_030--Hb_011633_040 Hb_029921_030--Hb_003972_060 Hb_001776_190 Hb_001776_190 Hb_029921_030--Hb_001776_190 Hb_000421_270 Hb_000421_270 Hb_029921_030--Hb_000421_270 Hb_006538_190 Hb_006538_190 Hb_029921_030--Hb_006538_190 Hb_164926_040 Hb_164926_040 Hb_003972_060--Hb_164926_040 Hb_000139_140 Hb_000139_140 Hb_003972_060--Hb_000139_140 Hb_000165_200 Hb_000165_200 Hb_003972_060--Hb_000165_200 Hb_004330_080 Hb_004330_080 Hb_003972_060--Hb_004330_080 Hb_000220_110 Hb_000220_110 Hb_003972_060--Hb_000220_110 Hb_002518_090 Hb_002518_090 Hb_003972_060--Hb_002518_090 Hb_002539_010--Hb_011633_040 Hb_002539_020 Hb_002539_020 Hb_002539_010--Hb_002539_020 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_000625_030 Hb_000625_030 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_008226_070 Hb_008226_070 Hb_002539_010--Hb_008226_070 Hb_011633_040--Hb_027380_190 Hb_152868_030 Hb_152868_030 Hb_011633_040--Hb_152868_030 Hb_012545_090 Hb_012545_090 Hb_011633_040--Hb_012545_090 Hb_001140_360 Hb_001140_360 Hb_011633_040--Hb_001140_360 Hb_000186_290 Hb_000186_290 Hb_021409_140--Hb_000186_290 Hb_000116_120 Hb_000116_120 Hb_021409_140--Hb_000116_120 Hb_000707_010 Hb_000707_010 Hb_021409_140--Hb_000707_010 Hb_000720_090 Hb_000720_090 Hb_021409_140--Hb_000720_090 Hb_003086_010 Hb_003086_010 Hb_021409_140--Hb_003086_010 Hb_172426_050 Hb_172426_050 Hb_021409_140--Hb_172426_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.215803 0.166935 0.558268 1.94803 0 0.0758194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208149 0.900376 0.376117 3.42512 0.668765

CAGE analysis