Hb_000165_200

Information

Type transcription factor
Description TF Family: LOB
Location Contig165: 181130-181642
Sequence    

Annotation

kegg
ID rcu:RCOM_0839580
description LOB domain-containing protein, putative
nr
ID XP_002528321.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SRL8
description LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1
trembl
ID B9SQQ2
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0839580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 017_C04.ab1: 181095-181804 , 021_K05.ab1: 181094-181723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_200 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_164926_040 0.1268739241 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
3 Hb_001472_110 0.1361290146 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
4 Hb_004545_070 0.1447159065 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
5 Hb_002301_110 0.1475612418 - - PREDICTED: protein E6-like [Populus euphratica]
6 Hb_002339_030 0.1525313556 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_009545_030 0.1571212714 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
8 Hb_000032_250 0.1631516485 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
9 Hb_008143_040 0.1708606633 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
10 Hb_158092_040 0.1710196775 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
11 Hb_003972_060 0.1711516272 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
12 Hb_001148_100 0.1719629026 - - -
13 Hb_007138_030 0.1734392904 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
14 Hb_009767_050 0.1739220694 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
15 Hb_008695_150 0.1751524088 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
16 Hb_000394_050 0.1810675514 - - -
17 Hb_007416_290 0.1813280982 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
18 Hb_008790_040 0.1819583567 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
19 Hb_002527_060 0.182681043 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
20 Hb_000186_290 0.1850253766 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000165_200 Hb_000165_200 Hb_164926_040 Hb_164926_040 Hb_000165_200--Hb_164926_040 Hb_001472_110 Hb_001472_110 Hb_000165_200--Hb_001472_110 Hb_004545_070 Hb_004545_070 Hb_000165_200--Hb_004545_070 Hb_002301_110 Hb_002301_110 Hb_000165_200--Hb_002301_110 Hb_002339_030 Hb_002339_030 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_003972_060 Hb_003972_060 Hb_164926_040--Hb_003972_060 Hb_164926_040--Hb_001472_110 Hb_164926_040--Hb_002301_110 Hb_000186_290 Hb_000186_290 Hb_164926_040--Hb_000186_290 Hb_008695_150 Hb_008695_150 Hb_164926_040--Hb_008695_150 Hb_001472_110--Hb_002301_110 Hb_001472_110--Hb_002339_030 Hb_003562_030 Hb_003562_030 Hb_001472_110--Hb_003562_030 Hb_002072_040 Hb_002072_040 Hb_001472_110--Hb_002072_040 Hb_004545_070--Hb_008695_150 Hb_009767_050 Hb_009767_050 Hb_004545_070--Hb_009767_050 Hb_013726_010 Hb_013726_010 Hb_004545_070--Hb_013726_010 Hb_000032_250 Hb_000032_250 Hb_004545_070--Hb_000032_250 Hb_004545_070--Hb_002072_040 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_002301_110--Hb_002072_040 Hb_002301_110--Hb_002339_030 Hb_002339_030--Hb_009767_050 Hb_002339_030--Hb_164926_040 Hb_002339_030--Hb_002072_040 Hb_007416_290 Hb_007416_290 Hb_009545_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_009545_030--Hb_008143_040 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_007134_030 Hb_007134_030 Hb_009545_030--Hb_007134_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.660607 2.03461 10.445 25.9345 0.758329 0.246729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.514859 2.52813 4.47724 23.6133 9.69556

CAGE analysis