Hb_002301_110

Information

Type -
Description -
Location Contig2301: 123306-124070
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05640g
description hypothetical protein
nr
ID XP_011001231.1
description PREDICTED: protein E6-like [Populus euphratica]
swissprot
ID Q01197
description Protein E6 OS=Gossypium hirsutum GN=E6 PE=2 SV=1
trembl
ID A9PDV3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05640g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24124: 123265-124319
cDNA
(Sanger)
(ID:Location)		 002_D19.ab1: 123265-124070 , 004_J03.ab1: 123265-124063 , 006_P22.ab1: 123265-123991 , 010_B11.ab1: 123265-123893 , 010_K22.ab1: 123265-123753 , 012_M15.ab1: 123265-124008 , 013_E04.ab1: 123265-123917 , 013_J13.ab1: 123265-124010 , 015_A14.ab1: 123265-124034 , 015_M18.ab1: 123287-123939 , 016_G12.ab1: 123263-123992 , 021_K01.ab1: 123265-124019 , 028_P22.ab1: 123265-123980 , 030_N04.ab1: 123265-124080 , 037_L16.ab1: 123263-124039 , 040_B13.ab1: 123265-124007 , 042_E08.ab1: 123265-124018 , 042_N10.ab1: 123265-124046 , 044_D13.ab1: 123265-124072 , 046_A22.ab1: 123265-123820 , 051_H23.ab1: 123265-124042 , 052_E03.ab1: 123265-124011

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_110 0.0 - - PREDICTED: protein E6-like [Populus euphratica]
2 Hb_001047_170 0.125814055 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
3 Hb_001472_110 0.1364224746 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
4 Hb_164926_040 0.1443342472 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
5 Hb_002072_040 0.1470030882 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
6 Hb_000165_200 0.1475612418 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_002339_030 0.1606808713 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_009767_050 0.1689710259 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
9 Hb_002025_380 0.1765667211 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
10 Hb_008790_040 0.1779872178 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
11 Hb_003562_030 0.1861482205 - - -
12 Hb_000028_490 0.1894912968 - - calmodulin-like protein 6a [Populus trichocarpa]
13 Hb_005144_080 0.1915825648 - - Serine carboxypeptidase, putative [Ricinus communis]
14 Hb_000032_250 0.1924805127 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
15 Hb_007138_030 0.1932794098 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
16 Hb_000749_160 0.1963412706 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_011861_030 0.1989700609 desease resistance Gene Name: NB-ARC putative disease resistance protein [Morus notabilis]
18 Hb_006501_100 0.2011824624 - - malic enzyme, putative [Ricinus communis]
19 Hb_006277_030 0.201472529 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002097_180 0.2038654564 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_110 Hb_002301_110 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_001472_110 Hb_001472_110 Hb_002301_110--Hb_001472_110 Hb_164926_040 Hb_164926_040 Hb_002301_110--Hb_164926_040 Hb_002072_040 Hb_002072_040 Hb_002301_110--Hb_002072_040 Hb_000165_200 Hb_000165_200 Hb_002301_110--Hb_000165_200 Hb_002339_030 Hb_002339_030 Hb_002301_110--Hb_002339_030 Hb_003562_030 Hb_003562_030 Hb_001047_170--Hb_003562_030 Hb_001568_010 Hb_001568_010 Hb_001047_170--Hb_001568_010 Hb_002025_380 Hb_002025_380 Hb_001047_170--Hb_002025_380 Hb_019026_050 Hb_019026_050 Hb_001047_170--Hb_019026_050 Hb_001040_200 Hb_001040_200 Hb_001047_170--Hb_001040_200 Hb_001472_110--Hb_164926_040 Hb_001472_110--Hb_000165_200 Hb_001472_110--Hb_002339_030 Hb_001472_110--Hb_003562_030 Hb_001472_110--Hb_002072_040 Hb_003972_060 Hb_003972_060 Hb_164926_040--Hb_003972_060 Hb_164926_040--Hb_000165_200 Hb_000186_290 Hb_000186_290 Hb_164926_040--Hb_000186_290 Hb_008695_150 Hb_008695_150 Hb_164926_040--Hb_008695_150 Hb_002072_040--Hb_002025_380 Hb_009767_050 Hb_009767_050 Hb_002072_040--Hb_009767_050 Hb_005168_020 Hb_005168_020 Hb_002072_040--Hb_005168_020 Hb_006277_030 Hb_006277_030 Hb_002072_040--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070 Hb_004545_070 Hb_004545_070 Hb_000165_200--Hb_004545_070 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_002339_030--Hb_009767_050 Hb_002339_030--Hb_164926_040 Hb_002339_030--Hb_002072_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43458 67.2743 289.809 614.733 6.30259 1.34399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3643 3.71785 128.657 574.429 132.14

CAGE analysis