Hb_001472_110

Information

Type desease resistance
Description Gene Name: TIR_2
Location Contig1472: 180619-183618
Sequence    

Annotation

kegg
ID rcu:RCOM_1687230
description nucleoside-triphosphatase, putative
nr
ID XP_002509825.1
description nucleoside-triphosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE1
description Nucleoside-triphosphatase, putative OS=Ricinus communis GN=RCOM_1687230 PE=4 SV=1
Gene Ontology
ID GO:0005886
description disease resistance protein (tir-nbs class)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_110 0.0 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
2 Hb_164926_040 0.1352554381 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
3 Hb_000165_200 0.1361290146 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_002301_110 0.1364224746 - - PREDICTED: protein E6-like [Populus euphratica]
5 Hb_002339_030 0.1527392792 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_003562_030 0.1700594831 - - -
7 Hb_002072_040 0.1739168605 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
8 Hb_008066_060 0.174706616 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
9 Hb_001047_170 0.1828971536 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
10 Hb_009767_050 0.1845929912 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
11 Hb_003972_060 0.1949901886 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
12 Hb_004545_070 0.1959519861 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
13 Hb_010931_020 0.2004082799 - - Kunitz-type protease inhibitor KPI-F4 [Populus trichocarpa x Populus deltoides]
14 Hb_000186_290 0.2015875295 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
15 Hb_006141_030 0.2077448832 - - -
16 Hb_099157_010 0.2102816032 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
17 Hb_002025_380 0.2103090301 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
18 Hb_008695_150 0.211972636 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
19 Hb_001040_200 0.2131130372 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
20 Hb_006501_100 0.2161287002 - - malic enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_001472_110 Hb_001472_110 Hb_164926_040 Hb_164926_040 Hb_001472_110--Hb_164926_040 Hb_000165_200 Hb_000165_200 Hb_001472_110--Hb_000165_200 Hb_002301_110 Hb_002301_110 Hb_001472_110--Hb_002301_110 Hb_002339_030 Hb_002339_030 Hb_001472_110--Hb_002339_030 Hb_003562_030 Hb_003562_030 Hb_001472_110--Hb_003562_030 Hb_002072_040 Hb_002072_040 Hb_001472_110--Hb_002072_040 Hb_003972_060 Hb_003972_060 Hb_164926_040--Hb_003972_060 Hb_164926_040--Hb_000165_200 Hb_164926_040--Hb_002301_110 Hb_000186_290 Hb_000186_290 Hb_164926_040--Hb_000186_290 Hb_008695_150 Hb_008695_150 Hb_164926_040--Hb_008695_150 Hb_004545_070 Hb_004545_070 Hb_000165_200--Hb_004545_070 Hb_000165_200--Hb_002301_110 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_002301_110--Hb_002072_040 Hb_002301_110--Hb_002339_030 Hb_009767_050 Hb_009767_050 Hb_002339_030--Hb_009767_050 Hb_002339_030--Hb_164926_040 Hb_002339_030--Hb_002072_040 Hb_000834_040 Hb_000834_040 Hb_003562_030--Hb_000834_040 Hb_001040_200 Hb_001040_200 Hb_003562_030--Hb_001040_200 Hb_188281_050 Hb_188281_050 Hb_003562_030--Hb_188281_050 Hb_000112_050 Hb_000112_050 Hb_003562_030--Hb_000112_050 Hb_003640_010 Hb_003640_010 Hb_003562_030--Hb_003640_010 Hb_003562_030--Hb_001047_170 Hb_002025_380 Hb_002025_380 Hb_002072_040--Hb_002025_380 Hb_002072_040--Hb_009767_050 Hb_005168_020 Hb_005168_020 Hb_002072_040--Hb_005168_020 Hb_006277_030 Hb_006277_030 Hb_002072_040--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0143217 0.0379436 0.257128 0.56242 0.0123982 0.0293306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.022847 0.10926 0.783842 0.17061

CAGE analysis